Publications – Genotypic

Publication

Krishnan, S., Karpe, S. D., Kumar, H., Nongbri, L. B., Ramanathan, S., Grosse-Wilde, E., … & Borges, R. M. (2023). Sensing volatiles throughout the body: Geographic and tissue-specific olfactory receptor expression in the fig wasp Ceratosolen fusciceps.

bioRxiv, 2023-03.

2024

Singh, S., Subramanian, S., Gupta, N., Bajaj, A., & Manickam, N. (2024). Genomic insights on gene clusters and pathways for the biodegradation of plastic compounds: Unravelling the metabolic versatility in a Dietzia kunjamensis IITR165.

Current Research in Biotechnology, 100258.

2024

2025 Publications

Roy, P., Gujarati, S., Gupta, P., Gupta, I., Mahapatra, T., Gupta, D., … & Das, A. (2025). A tale of two parasites: a glimpse into the RNA methylome of patient-derived Plasmodium falciparum and Plasmodium vivax isolates.

Malaria Journal, 24(1), 1-15.

2025

Rajendran, P., Saini, S., Kumar, N., Vashistha, H., Thiruvengadam, K., Ramamoorthy, T., … & Padmapriyadarsini, C. (2023). Establishing proof of concept for utility of Trueprep®-extracted DNA in line-probe assay testing.

The International Journal of Tuberculosis and Lung Disease, 27(10), 742-747.

2025

Chakraborty, A., Saroja, M. K., Garai, S., Sarkar, S., Bhattacharjee, A., Roy, K., … & Chatterjee, G. (2025). Deciphering the microbiome potential and metabolic profiling of animal waste co-composting reveals the co-occurrence network of non-microbial and microbial biostimulants to strengthen conservative practices in sustainable agriculture.

Chemical and Biological Technologies in Agriculture, 12(1), 1-21.

2025

Dubey, P., Bachhawat, A. K., Laxman, S., & Ahmad, M. S. (2025). Seo1p, a high affinity, plasma membrane transporter of the gamma-Glu-met dipeptide in yeasts and fungi.

bioRxiv, 2025-01.

2025

Uthaiah, N. M., Venkataramareddy, S. R., Mudhol, S., & Sheikh, A. Y. (2025). EPA-rich Nannochloropsis oceanica biomass regulates gut microbiota, alleviates inflammation and ameliorates liver fibrosis in rats.

Food Research International, 115733.

2025

Rashid, M. H., Kumar, S. P., Rajan, R., & Mamillapalli, A. (2025). Salivary microbiota dysbiosis and elevated polyamine levels contribute to the severity of periodontal disease.

BMC Oral Health, 25(1), 2.

2025

Xiao, H., Du, X., Hou, H., Guo, W., Tao, Z., Bao, S., … & Fang, Y. X. (2025). ATOH8 confers the vulnerability of tumor cells to ferroptosis by repressing SCD expression.

Cell Death & Differentiation, 1-16.

2025

Diesse, J. M., Jadhav, S., Tamekou, S. L., Simo, G., Dzoyem, J. P., Souopgui, J., … & Nema, V. (2025). Disturbances in the gut microbiota potentially associated with metabolic syndrome among patients living with HIV-1 and on antiretroviral therapy at Bafoussam Regional Hospital, Cameroon.

Diabetology & Metabolic Syndrome, 17(1), 86.

2025

Tripathi, S., Sangwan, R. S., Mishra, B., Jadaun, J. S., & Sangwan, N. S. (2020). Berry transcriptome: insights into a novel resource to understand development dependent secondary metabolism in Withania somnifera (Ashwagandha).

Physiologia plantarum, 168(1), 148-173.

2025

Ducat, A., Doridot, L., Calicchio, R., Méhats, C., Vilotte, J. L., Castille, J., … & Vaiman, D. (2016). Endothelial cell dysfunction and cardiac hypertrophy in the STOX1 model of preeclampsia.

Scientific reports, 6(1), 19196.

2025

Patturaj, M., Manikantan, A., Veerasamy, S., Elias, A. A., & Ramasamy, Y. (2025). Whole genome resequencing unveils population structure and wood trait associations for Indian teak germplasm.

Tree Genetics & Genomes, 21(2), 8.

2025

Tripathi, V., Pal, S., Subramanian, S., & Manickam, N. (2025). Unravelling dibenzothiophene degradation pathway in a novel Ancylobacter bharuchii IITR112 and insights from genome analysis.

Journal of Environmental Chemical Engineering, 115630

2025

Haynes, Z., Nathan, S. D., Aryal, S., & Nyquist, A. (2024). Correlation of classic history, imaging and pathology with novel genetics in Birt-Hogg-Dubé syndrome.

BMJ Case Reports CP, 17(12), e262177.

2025

Park, H. Y., Jung, M., Lim, Y. J., Subramaniyam, S., Cho, S., Park, B. J., & Shin, Y. (2024). Genome Resources for Identifying SNPs Associated With Eight Horticultural Traits in Commercial Korean Elite Radish (Raphanus sativus) Lines.

Plant Breeding.

2025

Manimekalai, R., Saranya, J., Saravanakumar, K., Rajagopal, S., Jini, N., Selvi, A., … & Gomathi, R. (2024). Small RNA profiling and co-networking analysis identifies stress-responsive miRNAs involved in sugarcane and its
wild species.

Plant Physiology Reports, 1-19.

2025

Sadaqat, Z., Joseph, S., Verma, C., Muni Reddy, J., Prakash, A., Thomas, T., … & Vyas, N. (2025). Real time-PCR a diagnostic tool for reporting copy number variation and relative gene-expression changes in pediatric B-cell acute lymphoblastic leukemia—a pilot study.

Biology Methods and Protocols, 10(1), bpae098.

2025

Bhaskar, S., Gowda, J., Hegde, A., Thumu, S. C. R., Banerjee, S., Ramanan, N., … & Prasanna, J. (2024). Zic3 enables bimodal regulation of tyrosine hydroxylase expression in olfactory bulb and midbrain derived neurons.

34344454

2025

Bisht, N., Mayilraj, S., Kumar, S., & Kaur, N. (2024). Identification of NRPS and type II PKS biosynthetic gene cluster (s) encoding decaplanin and kigamicin from Amycolatopsis regifaucium

DSM 45072T.

2025

Gelgie, A. E., Schneider, P., Citti, C., Dordet-Frisoni, E., Gillespie, B. E., Almeida, R. A., … & Lysnyansky, I. (2024). Mycoplasma bovis 5′-nucleotidase is a virulence factor conferring mammary fitness in bovine mastitis.

PLoS Pathogens, 20(11), e1012628.

2025

MISHRA, S., Verma, V., Pradhan, S., Dwivedi, M., Jorwal, P., Gowda, V., … & Nongthomba, U. (2024). Urolithin A mitigates behavioral and synaptic deficits associated with epilepsy through VDAC-1 inhibition:

A novel treatment approach.

2025

2024 Publications

Current Research in Biotechnology, 100258.

2024

bioRxiv, 2023-03.

2024

Ueland, T., Astrup, E., Otterdal, K., Lekva, T., Janardhanan, J., Michelsen, A. E., … & Damås, J. K. (2024). CC Motif Ligand 7 (CCL7) and CC Motif Chemokine Receptor 3 (CCR3) dysregulation in patients with scrub typhus and association with mortality. The Journal of Infectious Diseases, jiae401.

The Journal of Infectious Diseases, jiae401.

2024

Jasna, V., Parvathi, A., Gireesh, K. T., & Pazhayamadom, D. G. (2024). Sediment bacterial diversity in the upwelling regions of Alappuzha

on the southwest coast of India.

2024

Singh D. Mosahari, P. V. Sharma, P. Neog K., & Bora U. (2024). Comparative Genomic and Phylogenetic Analysis of the Complete Mitochondrial Genome of Cricula trifenestrata (Helfer) Among Lepidopteran Insects.

Genome, (ja).

2024

Rahila, K., & Vardhanan, Y. S. (2024). Comparative transcriptome profiling of two pesticides, Acephate and Chlorantraniliprole in non-targeted insect model, Drosophila melanogaster.

Pesticide Biochemistry and Physiology, 106023.

2024

Sundaresan, A. K., Gangwar, J., Murugavel, A., Malli Mohan, G. B., & Ramakrishnan, J. (2024). Complete genome sequence, phenotypic correlation and pangenome analysis of uropathogenic Klebsiella spp.

AMB Express, 14(1), 78.

2024

Srinivasulu, B., & Chelmala, S. (2024). Molecular diet analysis using fecal DNA metabarcoding reveals the whole and the core diet of the critically endangered Kolar leaf-nosed bat Hipposideros hypophyllus and its congeners.

545565665

2024

Singh, P., Sharma, S., & Kumar Rath, S. (2014). Genistein induces deleterious effects during its acute exposure in Swiss mice.

BioMed research international, 2014(1), 619617.

2024

Bandekar, M., More, K. D., Seleyi, S. C., Ramaiah, N., Kekäläinen, J., & Akkanen, J. (2024). Comparative analysis of microbiome inhabiting oxygenated and deoxygenated habitats using V3 and V6 metabarcoding of 16S rRNA gene.

Marine Environmental Research, 106615.

2024

Sharma, P., Singh, S., Singh, A. V., Das, K., Bhaskar, Y., Goel, I., … & Das, R. (2024). Alteration of gastric microbiota in Helicobacter pylori-infected individuals suffering from GERD, DU, and gastritis.

Indian Journal of Pathology and Microbiology, 10-4103.

2024

Kumar, A., Kashyap, J., Mandal, S., Mishra, G., Rath, J., Rout, G. R., … & Panigrahy, M. (2024). Mechanism of action of carbon nanoparticle verified in rice: Improved water use efficiency is the key.

7878788

2024

Sharma, G., Kaur, B., Singh, V., Raheja, Y., Falco, M. D., Tsang, A., & Chadha, B. S. (2024). Genome and secretome insights: unravelling the lignocellulolytic potential of Myceliophthora verrucosa for enhanced hydrolysis of lignocellulosic biomass.

Archives of Microbiology, 206(5), 1-18.

2024

Kanodia, A., Monga, R., Ilyas, M., Verma, Y., Mohapatra, S., Rao, N. S., … & Atmakuri, K. (2024). Metagenome Analysis of Cholesteatoma-associated Bacteria: A Pilot Study.

Indian Journal of Otolaryngology and Head & Neck Surgery, 1-12.

2024

Shi, X., Sharma, S., Chmielewski, R. A., Markovic, M. J., VanEpps, J. S., & Yau, S. T. (2024). Rapid diagnosis of bloodstream infections using a culture-free phenotypic platform.

Communications Medicine, 4(1), 77.

2024

Rout, A. K., Dixit, S., Tripathy, P. S., Rout, S. S., Parida, S. N., Parida, P. K., … & Behera, B. K. (2024). Metagenomic Landscape of sediments of river Ganga reveals Microbial Diversity, potential Plastic and Xenobiotic degradation Enzymes.

Journal of Hazardous Materials, 134377.

2024

Song, T., Gupta, S., Sorokin, Y., Frenkel, O., Cytryn, E., & Friedman, J. (2024). A Burkholderia cenocepacia-like environmental isolate strongly inhibits the plant fungal pathogen Zymoseptoria tritici.

Applied and Environmental Microbiology, e02222-23.

2024

Yadav, E. J., Prabhakar, Y. K., Shanmugam, G., Vijayakumar, P., Kumar, M. J., Vijayakumar, N., & Murthy, J. S. R. (2024). Whole genome characterization of Jaagsiekte Sheep Retrovirus isolated from OPA infected sheep (India) and structural assessment (In-silico) of proteins of JSRV.

The Microbe, 100068.

2024

Nair, G. R., & Raja, S. S. (2021). Insights Into the Diversity of Terrestrial Soil Bacterial Communities Associated With Four Contrasting Köppen Climatic Zones.

645656677

2024

Acharya, P., Singh, U. S., Rajamannar, V., Muniaraj, M., Nayak, B., & Das, A. (2024). Genome resequencing and genome-wide polymorphisms in mosquito vectors Aedes aegypti and Aedes albopictus from south India.

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2024

Anandan, A., Panda, S., Mahender, A., & Murugaiyan, V. (2024). Breeding Rice Variety with Suitable Plant Ideotype for Next-Generation Indian Agriculture in the Changing Climatic Conditions. In Climate Change Impacts on Soil-Plant-Atmosphere Continuum (pp. 507-528). Singapore:

Springer Nature Singapore.

2024

Khairnar, K., & Tomar, S. S. (2024). COVID-19 genome surveillance: A geographical landscape and mutational mapping of SARS-CoV-2 variants in central India over two years.

Virus Research, 344, 199365.

2024

Krishnaswamy, S. M., Arunachal, G., Singh, K. G., Thomson, V. S., George, P., Rao, S., & Danda, S. (2024). Investigation of mutation spectrum amongst patients with familial primary cardiomyopathy using targeted NGS in Indian population.

Journal of Applied Genetics, 1-14.

2024

Panzade, K. P., Tribhuvan, K. U., Pawar, D. V., Jasrotia, R. S., Gaikwad, K., Dalal, M., … & Padaria, J. C. (2024). Discovering the regulators of heat stress tolerance in Ziziphus nummularia (Burm. f) wight and walk.-arn.

Physiology and Molecular Biology of Plants, 1-15.

2024

Shikha, Pandey, D. K., Upadhyay, S., Phukan, U. J., & Shukla, R. K. (2024). Transcriptome analysis of waterlogging-induced adventitious root and control taproot of Mentha arvensis.

Plant Cell Reports, 43(4), 104.

2024

Aswathy, C. S., Roy, C. B., Shahina, K., Vinod, M. P., & Biji, C. L. (2024). Comparative transcriptomic analysis of rubber (Hevea brasiliensis) clones differing in disease tolerance provides novel insights into the disease response associated with abnormal leaf fall disease caused by Phytophthora meadii.

South African Journal of Botany, 168, 130-150.

2024

Qian, Z., Li, Y., Pratush, A., Kan, J., Gu, J. D., Peng, T., … & Hu, Z. (2024). A comparative analysis of the microbial communities and functional genes of the nitrogen cycling in mangroves of China, Indian and Malaysia.

International Biodeterioration & Biodegradation, 190, 105767.

2024

Sarath, P., Parveen, M., Sreekumar, V. B., Dasgupta, M., Bohra, H. R., & Dev, S. A. (2024). Genetic erosion and population decline in four threatened rattan species of India: Springer Nature Singapore.

insights from genome-wide microsatellite analysis.

2024

Soman, A., Pradhan, T., Krishna, R., Hermon, E. S., Somanathan, T., Jinto, E. G., … & Nair, S. A. (2024). Decoding Early-Onset of Colorectal Cancer:

Insights into SERPINA3 Expression Patterns.

2024

Sood, C., Verma, J. K., Basak, R., Kapoor, A., Gupta, S., & Mukhopadhyay, A. (2024). Leishmania highjack host lipid body for its proliferation in macrophages by overexpressing host Rab18 and TRAPPC9 by downregulating miR-1914-3p expression.

Plos Pathogens, 20(2), e1012024.

2024

Golender, N., & Hoffmann, B. (2024). The Molecular Epidemiology of Epizootic Hemorrhagic Disease Viruses Identified in Israel between 2015 and 2023.

Epidemiologia, 5(1), 90-105.

2024

Arun, T. S., & Saxena, V. K. (2024). Comparative metagenomic analysis of gut microbial diversity of Indian native chicken (CARI Nirbheek) under different systems of management using NGS.

2024

Yadav, P., Das, J., Sundharam, S. S., & Krishnamurthi, S. (2024). Analysis of Culturable Bacterial Diversity of Pangong Tso Lake via a 16S rRNA Tag Sequencing Approach.

Microorganisms, 12(2), 397.

2024

Kumar, A., Manasa S, L., Kashyap, J., Mandal, S., Mishra, G., Rath, J., … & Panigrahy, M. (2024). Carbon nanoparticle exposure strengthens water-relation parameters by stimulating abscisic acid pathway and aquaporins genes in rice.

bioRxiv, 2024-02.

2024

Rout, A. K., Tripathy, P. S., Dixit, S., Behera, D. U., Behera, B., Das, B. K., & Behera, B. K. (2024). Metagenomics analysis of sediments of river Ganga, India for bacterial diversity, functional genomics, antibiotic resistant genes and virulence factors.

Current Research in Biotechnology, 100187. (PDF)

2024

Sahoo, S., Behera, M. R., Mishra, B., Kar, S., Sahoo, P., Sahoo, N., & Biswal, S. (2024). Microbial Diversity and Resistome in Milk of Cows with Subclinical Mastitis in a Coastal District of Odisha, India.

Indian Journal of Microbiology, 1-10.

2024

2023 Publications

2015 Publications

Lekha G, Gupta T, Awasthi AK, Murthy GN, Trivedy K, Ponnuvel KM. Genome wide microarray based expression profiles associated with BmNPV resistance and susceptibility in Indian silkworm races of Bombyx mori.

Genomics. 2015;106(6):393-403.

2015

Andreuzza S, Nishal B, Singh A, Siddiqi I. The Chromatin Protein DUET/MMD1 Controls Expression of the Meiotic Gene TDM1 during Male Meiosis in Arabidopsis.

PLoS Genet. 2015;11(9):e1005396.

2015

Sundaresan S, Philosoph-hadas S, Riov J, Mugasimangalam R, Kuravadi NA, Kochanek B, Salim S, Tucker ML and Meir S(2015) De novo transcriptome sequencing and development of abscission zone-specific microarray as a new molecular tool for analysis of tomato organ abscission. Front.

Plant Sci. 6:1258. doi:10.3389/fpls.2015.01258

2015

Kim J, Sundaresan S, Philosoph-hadas S, Yang R, Meir S, Tucker ML. Examination of the Abscission-Associated Transcriptomes for Soybean, Tomato, and Arabidopsis Highlights the Conserved Biosynthesis of an Extensible Extracellular Matrix and Boundary Layer.

Front Plant Sci. 2015;6:1109.

2015

Archana S, Enketeswara S, Structural insights of microbial community of Deulajhari (India) hot spring using 16s-rRNA based metagenomic sequencing, (2015),

doi:10.1016/j.gdata.2015.12.004

2015

Mohan A, Bhosle A, Chandra N. 2015. Complete genome sequences of an Escherichia coli laboratory strain and trimethoprim-resistant (TMP32XR) mutant strains.

Genome Announc 3(6):e01434-15.doi:10.1128/genomeA.01434-15.

2015

Sathishkumar Y, Krishnaraj C, Rajagopal K, Sen D, Lee YS. High throughput de novo RNA sequencing elucidates novel responses in Penicillium chrysogenum under microgravity.

Genome Announc 3(6):e01434-15.doi:10.1128/genomeA.01434-15.

2015

Mondal TK, Ganie SA, Debnath AB (2015) Identification of Novel and Conserved miRNAs from Extreme Halophyte, Oryza coarctata, a Wild Relative of Rice.

PLoS ONE 10(10): e0140675. doi:10.1371/journal.pone.0140675

2015

Kumar A, Henrissat B, Arvas M, Syed MF, Thieme N, Benz JP, et al. (2015) De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulisStrain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster.

PLoS ONE 10(10): e0140398. doi:10.1371/journal.pone.0140398

2015

Ravishankar, K.V., Megha, H.S., Rekha, A., Khadke, G.N., Veerraju, C.H., Insights into Musa balbisiana and Musa acuminata species divergence and development of genic microsatellites by transcriptomics approach, (2015)

doi:10.1016/j.plgene.2015.09.007

2015

Chakka D, Gudla R, Madikonda AK, et al. The organophosphate degradation (opd) island borne esterase induced metabolic diversion in E. coli and its influence on p-nitrophenol degradation.

J Biol Chem. 2015;

2015

Desler C, Frederiksen JH, Angleys M, et al. Increased deoxythymidine triphosphate levels is a feature of relative cognitive decline.

Mitochondrion. 2015;

2015

Chhakchhuak L, De mandal S, Gurusubramanian G, et al. Complete mitochondrial genome of the Himalayan honey bee, Apis laboriosa.

Mitochondrial DNA. 2015;:1-2.

2015

Sahoo RK, Subudhi E , Kumar M. Investigation of bacterial diversity of hot springs of Odisha, India.

Genomics Data 2015.

2015

Pathak BR, Breed AA, Apte S, Acharya K, Mahale SD. Cysteine-rich secretory protein 3 plays a role in prostate cancer cell invasion and affects expression of PSA and ANXA1.

Mol Cell Biochem. 2015;

2015

Chatterjee S, Alampalli SV, Nageshan RK, Chettiar ST, Joshi S, Tatu US. Draft genome of a commonly misdiagnosed multidrug resistant pathogen Candida auris.

BMC Genomics. 2015;16(1):686.

2015

Halder P, Kumar R, Jana K, et al. Gene expression profiling of Mycobacterium tuberculosis Lipoarabinomannan-treated macrophages: A role of the Bcl-2 family member A1 in inhibition of apoptosis in mycobacteria-infected macrophages.

IUBMB Life. 2015;

2015

Garg A, Agrawal L, Misra RC, Sharma S, Ghosh S. Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes.

BMC Genomics. 2015;16:659.

2015

M. Muthusamy, S. Uma, S. Backiyarani, M. S. Saraswathi.Genome-wide screening for novel, drought stress-responsive long non-coding RNAs in drought-stressed leaf transcriptome of drought-tolerant and -susceptible banana (Musa spp) cultivars using Illumina high-throughput sequencing.

Plant Biotechnology Reports 2015.

2015

Kamala, S.; Makeshkumar, T. Transcriptome profiling of in vitro lines propagated from corm bud tip of elephant foot yam (Amorphophallus paeoniifolius) approves complete potyviruses elimination.

European Journal of Plant Pathology 2015.

2015

Meir, S., Sundaresan, S., Riov, J., Agarwal, I., & Philosoph-Hadas, S. (2015). Role of auxin depletion in abscission control.

Stewart Postharvest Review,11(2), 1-15.

2015

Srivastava PL, Daramwar PP, Krithika R, Pandreka A, Shankar SS, Thulasiram HV. Functional Characterization of Novel Sesquiterpene Synthases from Indian Sandalwood, Santalum album.

Sci Rep. 2015;5:10095.

2015

Subudhi AK, Boopathi PA, Pandey I, et al. Disease specific modules and hub genes for intervention strategies: A co-expression network based approach for Plasmodium falciparum clinical isolates.

Infect Genet Evol. 2015;35:96-108.

2015

Mathan kumar R, Kaur G, Kumar N, et al. Taxonomic description and genome sequence of Salinicoccus sediminis sp. nov., a novel halotolerant bacterium isolated from marine sediment.

Int J Syst Evol Microbiol. 2015;

2015

Chhakchhuak L, De mandal S, Gurusubramanian G, Nachimuthu SK. The near complete mitochondrial genome of the Giant honey bee, Apis dorsata (Hymenoptera: Apidae: Apinae) and its phylogenetic status.

Mitochondrial DNA. 2015;:1-2.

2015

Sahu DK, Panda SP, Meher PK, et al. Construction, De-Novo Assembly and Analysis of Transcriptome for Identification of Reproduction-Related Genes and Pathways from Rohu, Labeo rohita (Hamilton).

PLoS ONE. 2015;10(7):e0132450.

2015

Dholaniya PS, Ghosh S, Surampudi BR, Kondapi AK. A knowledge driven supervised learning approach to identify gene network of differentially up-regulated genes during neuronal senescence in Rattus norvegicus.

BioSystems. 2015;

2015

Cheedipudi S, Puri D, Saleh A, et al. A fine balance: epigenetic control of cellular quiescence by the tumor suppressor PRDM2/RIZ at a bivalent domain in the cyclin a gene.

Nucleic Acids Res. 2015;

2015

Abraham A, Varatharajan S, Karathedath S, et al. RNA expression of genes involved in cytarabine metabolism and transport predicts cytarabine response in acute myeloid leukemia.

Pharmacogenomics. 2015;:1-14.

2015

Vanlalruati C, Mandal S, Gurusubramanian G, Senthil kumar N. Complete mitochondrial genome of Chocolate Pansy, Junonia iphita (Lepidoptera: Nymphalidae: Nymphalinae).

Mitochondrial DNA. 2015;1-2.

2015

Manjegowda MC,Deb G,Kumar N,Limaye AM. Expression profiling of genes modulated by estrogen, EGCG or both in MCF-7 breast cancer cells.

Genomics Data. 2015

2015

Nithin C, Patwa N, Thomas A, Bahadur RP, Basak J. Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures.

BMC Plant Biol. 2015;15(1):140.

2015

Gupta KP, Dholaniya PS, Chekuri A, Kondapi AK. Analysis of gene expression during aging of CGNs in culture: implication of SLIT2 and NPY in senescence.

Age (Dordr). 2015;37(3):9789.

2015

Shukla A, Singh VK, Bharadwaj DR, et al. De Novo Assembly of Bitter Gourd Transcriptomes:Gene Expression and Sequence Variations in Gynoecious and Monoecious Lines.

PLoS ONE. 2015;10(6):e0128331.

2015

Subudhi AK, Boopathi PA, Pandey I, et al. Plasmodium falciparum Complicated Malaria: Modulation and Connectivity between Exportome and Variant Surface Antigen Gene Families.

Mol Biochem Parasitol. 2015.

2015

Sahoo L, Kumar S, Das SP, et al. Complete mitochondrial genome sequence of Heteropneustes fossilis obtained by paired end next generation sequencing.

Mitochondrial DNA. 2015;:1-2

2015

Rastogi S, Kalra A, Gupta V, et al. Unravelling the genome of Holy basil: an “incomparable” “elixir of life” of traditional Indian medicine.

BMC Genomics. 2015;16:413.

2015

Padiadpua J, Baloni P, Chandra N. Gene expression profiles of wild-type and isoniazid-resistant strains of Mycobacterium smegmatis.

Science Direct. 2015

2015

Fonseca DJ, Patiño LC, Suárez YC, et al. Next generation sequencing in women affected by nonsyndromic premature ovarian failure displays new potential causative genes and mutations.

Fertil Steril. 2015

2015

Ghag SB, Shekhawat UK, Ganapathi TR. Small RNA Profiling of Two Important Cultivars of Banana and Overexpression of miRNA156 in Transgenic Banana Plants.

PLoS ONE. 2015;10(5):e0127179.

2015

B. Kesavan, K.V. Srividhya, S. Krishnaswamy, Mugasimangalam Raja, N. Vidya, A.V.S.K. Krishna Mohan. Understanding the virulence of the entero-aggregative E.

coli O104:H4.Int. J. of Bioinformatics Research and Applications. 2015

2015

Arya R, R R, Rs S and Princy S. SarA based Novel Therapeutic Candidate against Staphylococcus aureus associated with Vascular Graft Infections.

Front. Microbiol.2015

2015

Kanaujia PK, Bajaj P, Singhal N, et al. Proteomic analysis of Yersinia enterocolitica biovar 1A under iron-rich and iron-poor conditions indicate existence of efficiently regulated mechanisms of iron homeostasis.

Journal of Proteomics. 2015

2015

Chakraborty N, Sharma P, Kanyuka K, et al. Transcriptome analysis of Arabidopsis GCR1 mutant reveals its roles in stress, hormones, secondary metabolism and phosphate starvation.

PLoS ONE. 2015;10(2):e0117819.

2015

Bose D, Shetty M, Kutty A.V.M, et al. Molecular Delineation of Partial Trisomy 14q and Partial Trisomy 12p in a Patient with Dysmorphic Features, Heart Defect and Developmental Delay.

Front. Microbiol.2015

2015

Vaid N, Pandey P, Srivastava VK, Tuteja N. Pea lectin receptor-like kinase functions in salinity adaptation without yield penalty, by alleviating osmotic and ionic stresses and upregulating stress-responsive genes.

Plant Mol Biol. 2015.

2015

Kumar D, Datta R, Hazra S, Sultana A, Mukhopadhyay R, Chattopadhyay S. Transcriptomic Profiling of Arabidopsis thaliana Mutant pad2.1 in Response to Combined Cold and Osmotic Stress.

PLoS ONE. 2015;10(3):e0122690.

2015

Chendamarai E, Ganesan S, Alex AA, et al. Comparison of newly diagnosed and relapsed patients with acute promyelocytic leukemia treated with arsenic trioxide: insight into mechanisms of resistance.

PLoS ONE. 2015;10(3):e0121912.

2015

Pallavi B, Shankar KM, Abhiman PB, Iqlas A.Identification of putative genes involved in parasitism in the anchor worm, Lernaea cyprinacea by de novo Transcriptome analysis.

Experimental Parasitology. 2015

2015

Rajagopal I, Sankareswaran UM. An Adaptive Particle Swarm Optimization Algorithm for Solving DNA Fragment Assembly Problem.

Current Bioinformatics. 2015

2015

Srivastava VK, Suneetha KJ, Kaur R. The mitogen-activated protein kinase CgHog1 is required for iron homeostasis, adherence and virulence in Candida glabrata.

FEBS J. 2015.

2015

Banerjee A, Ghoshal PK, Sengupta K.Novel Linkage of LMNA Single nucleotide polymorphism with Dilated Cardiomyopathy in an Indian case study.

IJC Heart & Vasculature. 2015

2015

Rai R, Javvadi S, Chatterjee S. Cell-cell signaling promotes ferric iron uptake in Xanthomonas oryzae pv. oryzicola that contribute to its virulence and growth inside rice.

Mol Microbiol. 2015.

2015

Sen D, Chandrababunaidu MM, Singh D, et al. Draft Genome Sequence of the Terrestrial Cyanobacterium Scytonema millei VB511283, Isolated from Eastern India.

Genome Announc. 2015;3(2)

2015

Mittra I, Khare NK, Raghuram GV, Chaubal R, Khambatti F, Gupta D, Gaikwad A, Prasannan P, Singh A, Iyer A, Singh A, Upadhyay P, Nair NK, Mishra PK and Dutt A. Circulating nucleic acids damage DNA of healthy cells by integrating into their genomes.J.

Biosci. 40 91–111.2015

2015

Swain S, Singh N and Nandi AK. Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.J.

Biosci. 40 137–146.2015

2015

Haddada NJ, AlShagoora B, Batainh AM, et al. Draft genome sequence of the Algerian bee Apis mellifera
intermissa.

Genomics Data. 2015

2015

Tirumalai PS. Metabolic Gene Expression Shift by Listeria monocytogenes in Co-Culture Biofilms.

Canadian J of Microbiology. 2015

2015

Backiyarani S, Uma S, Nithya S, et al. Genome-Wide Analysis and Differential Expression of Chitinases in Banana Against Root Lesion Nematode (Pratylenchus coffeae) and Eumusa Leaf Spot
(Mycosphaerella eumusae) Pathogens.

J Applied Biochemistry and Biotechnology. 2015

2015

Shekhar MS, Gomathi A, Gopikrishna G, Ponniah AG. Gene expression profiling in gill tissues of White spot syndrome virus infected black tiger shrimp Penaeus monodon by DNA microarray.

VirusDisease. 2015

2015

Goodsmith N, Guo XV, Vandal OH, et al. Disruption of an M. tuberculosis Membrane Protein Causes a Magnesium-dependent Cell Division Defect and Failure to Persist in Mice.

PLoS Pathog. 2015;11(2):e1004645.

2015

Mohan A, Padiadpu J, Baloni P, Chandra N. Complete Genome Sequences of a Mycobacterium smegmatis Laboratory Strain (MC2 155) and Isoniazid-Resistant (4XR1/R2) Mutant Strains.

Genome Announc. 2015;3(1)

2015

Malhotra V, Agrawal R,Duncan TR,Saini DK, Clark-Curtiss JE.Mycobacterium tuberculosis Response Regulators, DevR and NarL Interact In Vivo and Co-Regulate Gene Expression during Aerobic Nitrate Metabolism.

J Biol Chem. 2015

2015

Haddad NJ. Mitochondrial genome of the Levant Region honeybee, Apis mellifera syriaca (Hymenoptera: Apidae).

Mitochondrial DNA. 2015;:1-2.

2015

Gopurappilly R, Bhonde R. Transcriptional profiling and functional network analyses of islet-like clusters (ILCs) generated from pancreatic stem cells in vitro.

Genomics. 2015

2015

Haddad NJ, Batainh AM, Migdadi OS, et al. Next generation sequencing of Apis mellifera syriaca identifies genes for Varroa resistance and beneficial bee keeping traits.

Insect Sci. 2015

2015

Nature-inspired novel Cuckoo Search Algorithm for genome sequence assembly.

Sadhana J.2015

2015

Dasgupta MG, Dharanishanthi V, Agarwal I, Krutovsky KV. Development of genetic markers in eucalyptus species by target enrichment and exome sequencing.

PLoS ONE. 2015;10(1):e0116528.

2015

Mothe T, Sultanpuram VR. Metagenomic analysis of Lonar soda lake samples.

Int J Adv Res Biol Sci. 2015

2015

2014 Publications

Saint M, Sawhney S, Sinha I, et al. The TAF9 C-terminal conserved region domain is required for SAGA and TFIID promoter occupancy to promote transcriptional activation.

Mol Cell Biol. 2014;34(9):1547-63.

2014

Beta M, Khetan V, Chatterjee N, et al. EpCAM knockdown alters microRNA expression in retinoblastoma–functional implication of EpCAM regulated miRNA in tumor progression.

PLoS ONE. 2014;9(12):e114800.

2014

Panyakampol J, Cheevadhanarak S, Sutheeworapong S, et al. Physiological and transcriptional responses to high temperature in Arthrospira (Spirulina) platensis C1.

Plant Cell Physiol. 2014

2014

Verma A, Rajput S, Kumar S, De S, Chakravarty AK, Kumar R, Datta TK. Differential histone modification status of spermatozoa in relation to fertility of Buffalo bulls.

Journal of Cellular Biochemistry. 2014

2014

Bahamondea PA, McMasterb ME, Servosc MR, Martyniuka CJ, Munkittricka KR. Molecular pathways associated with the intersex condition in rainbow darter (Etheostoma caeruleum) following exposures to municipal wastewater in the Grand River basin, ON, Canada.

Aquatic Toxicology J. 2014.

2014

Dhamija N, Choudhary D, Ladha JS, Pillai B, Mitra D. Tat predominantly associates with host promoter elements in HIV-1 infected T-cells: regulatory basis of transcriptional repression of c-Rel.

FEBS J. 2014

2014

Kamala S, Makeshkumar T, Sreekumar J, Chakrabarti SK.Whole transcriptome sequencing of diseased elephant foot yam reveals complete genome sequence of dasheen mosaic virus.

Virology Reports. 2014

2014

Jagtap, J.C., et al. Secretory prostate apoptosis response (Par)-4 sensitizes multicellular spheroids (MCS) of glioblastoma multiforme cells to tamoxifen-induced cell death.

FEBS Open Bio. 2014

2014

Baloni P, Padiadpu J, Singh A, Gupta KR, Chandra N. Identifying feasible metabolic routes in Mycobacterium smegmatis and possible alterations under diverse nutrient conditions.

BMC Microbiol. 2014;14(1):276.

2014

Devi V, Yadav E, Rao T, Satheesh K, Suresh P, Manasa B.Nucleotide Sequencing and Phylogenetic Analysis Using PCR Amplicons of U3 Gene of Jaagsiekte Sheep Retrovirus (JSRV) Detected in Natural Cases of Ovine Pulmonary Adenocarcinoma in India.

Open Journal of Veterinary Medicine. 2014

2014

Tuteja N, Sahoo RK, Huda KMK, Tula S, Renu T.OsBAT1 Augments Salinity Stress Tolerance by Enhancing Detoxification of ROS and Expression of Stress-Responsive Genes in Transgenic Rice.

Plant Molecular Biology Reporter. 2014

2014

Snijesh VP, Singh S, Vennila JJ. Rheumatoid Arthritis Candidate Genes Identification by Investigating Core and Periphery Interaction Structures.

Computational Intelligence in Medical Informatics Journal. 2014

2014

Prakash P, Ghosliya D, Gupta V. Identification of conserved and novel microRNAs in Catharanthus roseus by deep sequencing and computational prediction of their potential targets.

Gene.2014

2014

Boopathi PA, Subudhi AK, Garg S, et al. An in vivo Transcriptome Dataset of Natural Antisense Transcripts from Plasmodium falciparum Clinical Isolates.

J Genomics Data.2014

2014

Taranua I, Marina ED, Pistola GC, et al.Exposure to zearalenone mycotoxin alters in vitro porcine intestinal epithelial cells by differential gene expression.

ScienceDirect. 2014

2014

Snijesh. V.P, Singh S. Network Based Approach for Understanding the Chondrocyte Biology for Rheumatoid Arthritis.

IJIRCCE. 2014

2014

Cartagena JA, Seki M, Tanaka M, Yamauchi T, Sato S, Hirakawa H, Tsuge T. Gene Expression Profiles in Jatropha Under Drought Stress and During Recovery.

Springer US. 2014

2014

Likhoshvay A, Lomakina A, Grachev M. The complete alk sequences of Rhodococcus erythropolis from Lake Baikal.

Springer Plus. 2014

2014

BNV Priya , K Mahavishnan, DS Gurumurthy, H Bindumadhava, Upadhyay AP, Sharma NK. Fulvic Acid (FA) for Enhanced Nutrient Uptake and Growth: Insights from Biochemical and Genomic Studies.

Journal of Crop Improvement. 2014

2014

Patino LC, Battu R, Ortega-Recalde O, Nallathambi J, Anandula VR, et al. Exome Sequencing Is an Efficient Tool for Variant Late-Infantile Neuronal Ceroid Lipofuscinosis Molecular Diagnosis.

PLoS ONE. 2014

2014

Aiyaz M, Bipin C, Pantulwar V, Mugasimangalam R, Shanley CA, Ordway DJ, Orme IA. Whole genome response in guinea pigs infected with the high virulence strain Mycobacterium tuberculosis TT372.

Tuberculosis J. 2014

2014

Upadhyay S, Phukan UJ, Mishra S, Shukla RK. De novo leaf and root transcriptome analysis identified novel genes involved in Steroidal sapogenin biosynthesis in Asparagus racemosus. BMC Genomics.

2014;15(1):746.

2014

Agrawal R, Pandey P, Jha P, Dwivedi V, Sarkar C, Kulshreshtha R. Hypoxic signature of microRNAs in glioblastoma: insights from small RNA deep sequencing.

BMC Genomics. 2014;15(1):686.

2014

Biswal DK, Chatterjee A, Bhattacharya A, Tandon V. The mitochondrial genome of Paragonimus westermani (Kerbert, 1878), the Indian isolate of the lung fluke representative of the family Paragonimidae (Trematoda).

PeerJ. 2014

2014

Kumar KV, Vijayachari P, Raj RV, et al. Expression microarray of leptospiral strains recovered from the patients with pulmonary haemorrhages-a special reference to fatal complications.

Int.J.Curr.Microbiol.App.Sci. 2014

2014

Shashni R, Qayyum MZ, Vishalini V, Dey D, Sen R. Redundancy of primary RNA-binding functions of the bacterial transcription terminator Rho.

Nucleic Acids Res. 2014

2014

Ahmad HM, Muiwo P, Ramachandran SS, et al. miR-22 regulates expression of oncogenic Neuro-epithelial transforming gene 1, NET1.

FEBS J. 2014

2014

Rastogi S, Meena S, Bhattacharya A, et al. De novo sequencing and comparative analysis of holy and sweet
basil transcriptomes.

J Genomics Data.2014

2014

Bellale E, Naik M, Vb V, et al. Diarylthiazole: an anti-mycobacterial scaffold potentially targeting PrrB-PrrA two
component system.

J Med Chem. 2014

2014

Nagaraj S, Raghavan AV, Rao SN, Manjappara UV. Obestatin and Nt8U influence glycerolipid metabolism and PPAR gamma signaling in mice.

Int J Biochem Cell Biol. 2014

2014

Banu SA, Huda KMK, Sahoo KR, et al. Pea p68 Imparts Salinity Stress Tolerance in Rice by Scavenging of ROS-Mediated H2O2 and Interacts with Argonaute.

J Plant Molecular Biology.2014

2014

Dhanjala S, Singha KA, Singh S. Global Gene Expression Analysis of Bacterial Stress Response to Elevated Concentrations of Toxic Metalloids—Selenium and Arsenic.

J Geomicrobiology. 2014

2014

Mruthyunjaya S, Parveen D, Shah RD, et al. Gene expression analysis of laminin-1-induced neurite outgrowth in human mesenchymal stem cells derived from bone marrow.

J Biomed Mater Res A. 2014

2014

Priya S, Nigam A, Bajpai P, Kumar S. Diethyl Maleate Inhibits MCA+TPA Transformed Cell Growth via Modulation of GSH, MAPK, and Cancer Pathways.

Chem Biol Interact. 2014

2014

Kumar M, Gantasala NP, Roychowdhury T, et al. De Novo Transcriptome Sequencing and Analysis of the Cereal Cyst Nematode, Heterodera avenae.

PLoS ONE. 2014;9(5):e96311.

2014

Ghosh dasgupta M, George BS, Bhatia A, Sidhu OP. Characterization of Withania somnifera Leaf Transcriptome and Expression Analysis of Pathogenesis – Related Genes during Salicylic Acid Signaling.

PLoS ONE. 2014;9(4):e94803.

2014

Ella KM, Kandaswamy S. Vaccine Composition Comprising an Inactivated Chikungunya Virus strain.

US Patent Application Publication. 2014

2014

Janbon G, Ormerod KL, Paulet D, et al. Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation.

PLoS Genet. 2014.

2014

Chamoli M, Singh A, Malik Y, Mukhopadhyay A. A novel kinase regulates dietary restriction-mediated longevity in Caenorhabditis elegans.

Aging Cell. 2014

2014

Subudhi AK, Boopathi PA, Garg S, et al. Natural antisense transcripts in Plasmodium falciparum isolates from patients with complicated malaria.

Exp Parasitol. 2014

2014

Saint M, Sawhney S, Sinha I, et al. TAF9 C-terminal conserved region domain is required for SAGA and TFIID promoter occupancy to promote transcriptional activation.

Mol Cell Biol. 2014

2014

Pillai S, Behra R, Nestler H, Suter MJ, Sigg L, Schirmer K. Linking toxicity and adaptive responses across the transcriptome, proteome, and phenotype of Chlamydomonas reinhardtii exposed to silver.

Proc Natl Acad Sci USA. 2014;111(9):3490-5.

2014

Kureel J, Dixit M, Tyagi AM, et al. miR-542-3p suppresses osteoblast cell proliferation and differentiation, targets BMP-7 signaling and inhibits bone formation.

Cell Death Dis. 2014;5:e1050.

2014

Ghag SB, Shekhawat UK, Ganapathi TR. Host-induced post-transcriptional hairpin RNA-mediated gene silencing of vital fungal genes confers efficient resistance against Fusarium wilt in banana.

Plant Biotechnol J. 2014

2014

Dabir SS, Das D, Nallathambi J, Mangalesh S, Yadav NK, Schouten JS. Differential systemic gene expression profile in patients with diabetic macular edema: Responders versus nonresponders to standard treatment.

Indian J Ophthalmol. 2014;62(1):66-73.

2014

Avisetti DR, Babu KS, Kalivendi SV. Activation of p38/JNK Pathway Is Responsible for Embelin Induced Apoptosis in Lung Cancer Cells: Transitional Role of Reactive Oxygen Species.

PLoS ONE. 2014;9(1):e87050.

2014

Baranski M, Gopikrishna G, Robinson NA, et al. The Development of a High Density Linkage Map for Black Tiger Shrimp (Penaeus monodon) Based on cSNPs.

PLoS ONE. 2014;9(1):e85413.

2014

2013 Publications

Tiruvayipati S, Bhassu S, Kumar N, et al. Genome anatomy of the gastrointestinal pathogen, Vibrio parahaemolyticus of crustacean origin.

Gut Pathog. 2013;5(1):37.

2013

Thomas A, Mahantshetty U, Kannan S, et al. Expression profiling of cervical cancers in Indian women at different stages to identify gene signatures during progression of the disease.

Cancer Med. 2013;2(6):836-48.

2013

Aravindraja C, Viszwapriya D, Karutha pandian S. Ultradeep 16S rRNA sequencing analysis of geographically similar but diverse unexplored marine samples reveal varied bacterial community composition.

PLoS ONE. 2013;8(10):e76724.

2013

Paul S, Kundu A, Pal A. Identification and expression profiling of Vigna mungo microRNAs from leaf small RNA transcriptome by deep sequencing.

J Integr Plant Biol. 2014;56(1):15-23.

2013

Huda KM, Banu MS, Garg B, Tula S, Tuteja R, Tuteja N. OsACA6, a P-type IIB Ca²⁺ ATPase promotes salinity and drought stress tolerance in tobacco by ROS scavenging and enhancing the expression of stress-responsive genes.

Plant J. 2013;76(6):997-1015.

2013

A bioinformatics pipeline for sequence to structure: A case study with a Cml patient undergoing treatment with imatinib.

2013

Thomas E, Roman E, Claypool S, Manzoor N, Pla J, Panwar SL. Mitochondria influence CDR1 efflux pump activity, Hog1-mediated oxidative stress pathway, iron homeostasis, and ergosterol levels in Candida albicans.

Antimicrob Agents Chemother. 2013;57(11):5580-99.

2013

Garg R, Verma M, Agrawal S, Shankar R, Majee M, Jain M. Deep Transcriptome Sequencing of Wild Halophyte Rice, Porteresia coarctata, Provides Novel Insights into the Salinity and Submergence Tolerance Factors.

DNA Res. 2014;21(1):69-84.

2013

Boopathi PA, Subudhi AK, Garg S, et al. Revealing natural antisense transcripts from Plasmodium vivax isolates: evidence of genome regulation in complicated malaria.

Infect Genet Evol. 2013;20:428-43.

2013

Wang B, Niu D, Lam TH, Xiao Z, Ren EC. Mapping the p53 transcriptome universe using p53 natural polymorphs.

Cell Death Differ. 2014;21(4):521-32.

2013

Rao PP, Reddy YN, Ganesh K, Nair SG, Niranjan V, Hegde NR. Deep sequencing as a method of typing bluetongue virus isolates.

J Virol Methods. 2013;193(2):314-9.

2013

Crudo A, Petropoulos S, Suderman M, et al. Effects of antenatal synthetic glucocorticoid on glucocorticoid receptor binding, DNA methylation, and genome-wide mRNA levels in the fetal male hippocampus.

Endocrinology. 2013;154(11):4170-81.

2013

Walker R, Gissot M, Huot L, et al. Toxoplasma transcription factor TgAP2XI-5 regulates the expression of genes involved in parasite virulence and host invasion.

J Biol Chem. 2013;288(43):31127-38.

2013

Biswal DK, Ghatani S, Shylla JA, et al. An integrated pipeline for next generation sequencing and annotation of the complete mitochondrial genome of the giant intestinal fluke, Fasciolopsis buski (Lankester, 1857) Looss, 1899.

PeerJ. 2013;1:e207.

2013

Mudalkar S, Golla R, Ghatty S, Reddy AR. De novo transcriptome analysis of an imminent biofuel crop, Camelina sativa L. using Illumina GAIIX sequencing platform and identification of SSR markers.

Plant Mol Biol. 2014;84(1-2):159-71.

2013

Roth D, Finkelshtein A, Ingham C, et al. Identification and characterization of a highly motile and antibiotic refractory subpopulation involved in the expansion of swarming colonies of Paenibacillus vortex.

Environ Microbiol. 2013;15(9):2532-44.

2013

Wang B, Niu D, Lai L, Ren EC. p53 increases MHC class I expression by upregulating the endoplasmic reticulum aminopeptidase ERAP1.

Nat Commun. 2013;4:2359.

2013

Kumar S, Vikram S, Raghava GP. Genome annotation of Burkholderia sp. SJ98 with special focus on chemotaxis genes.

PLoS ONE. 2013;8(8):e70624.

2013

Sasibhushan S, C g p R, Ponnuvel KM. Genome wide microarray based expression profiles during early embryogenesis in diapause induced and non-diapause eggs of polyvoltine silkworm Bombyx mori.

Genomics. 2013;102(4):379-87.

2013

Das M, Saudagar P, Sundar S, Dubey VK. Miltefosine-unresponsive Leishmania donovani has a greater ability than miltefosine-responsive L. donovani to resist reactive oxygen species.

FEBS J. 2013;280(19):4807-15.

2013

Fanibunda SE, Modi DN, Bandivdekar AH. HIV gp120 induced gene expression signatures in vaginal epithelial cells.

Microbes Infect. 2013;15(12):806-15.

2013

Walker CG, Littlejohn MD, Meier S, Roche JR, Mitchell MD. DNA methylation is correlated with gene expression during early pregnancy in Bos taurus.

Physiol Genomics. 2013;45(7):276-86.

2013

Fréalle E, Aliouat-denis CM, Delhaes L, Hot D, Dei-cas E. Transcriptomic insights into the oxidative response of stress-exposed Aspergillus fumigatus.

Curr Pharm Des. 2013;19(20):3713-37.

2013

Poulami Das. Identification of Specific Genetic Alterations in Cervical Cancer by Genome wide LOH and Copy Number Analysis.Indian ETD Repository. 2013.

2013

Banerjee S, Khandelia P, Melangath G, Bashir S, Nagampalli V, Vijayraghavan U. Splicing functions and global dependency on fission yeast slu7 reveal diversity in spliceosome assembly.

Mol Cell Biol. 2013;33(16):3125-36.

2013

Ortega-recalde O, Vergara JI, Fonseca DJ, et al. Whole-exome sequencing enables rapid determination of xeroderma pigmentosum molecular etiology.

PLoS ONE. 2013;8(6):e64692.

2013

Sellathurai J, Cheedipudi S, Dhawan J, Schrøder HD. A novel in vitro model for studying quiescence and activation of primary isolated human myoblasts.

PLoS ONE. 2013;8(5):e64067.

2013

Chakraborty U, Mohamed A, Kakade P, Mugasimangalam RC, Sadhale PP, Sanyal K. A stable hybrid containing haploid genomes of two obligate diploid Candida species.

Eukaryotic Cell. 2013;12(8):1061-71.

2013

Zhang S, Guo T, Chan H, Sze SK, Koh CG. Integrative transcriptome and proteome study to identify the signaling network regulated by POPX2 phosphatase.

J Proteome Res. 2013;12(6):2525-36.

2013

ArgP protein of Escherichia coli: roles in osmoregulation, gene regulation and inter-relationship with LysG of Corynebacterium glutamicum,

2013

Sangwan RS, Tripathi S, Singh J, Narnoliya LK, Sangwan NS. De novo sequencing and assembly of Centella asiatica leaf transcriptome for mapping of structural, functional and regulatory genes with special reference to secondary metabolism.

Gene. 2013;525(1):58-76.

2013

Agarwal P, Srivastava R, Srivastava AK, Ali S, Datta M. miR-135a targets IRS2 and regulates insulin signaling and glucose uptake in the diabetic gastrocnemius skeletal muscle.

Biochim Biophys Acta. 2013;1832(8):1294-303.

2013

Shwetha S, Gouthamchandra K, Chandra M, Ravishankar B, Khaja MN, Das S. Circulating miRNA profile in HCV infected serum: novel insight into pathogenesis.

Sci Rep. 2013;3:1555.

2013

Priya S, Nigam A, Bajpai P, Kumar S. Dysregulation of pathways involved in the processing of cancer and microenvironment information in MCA + TPA transformed C3H/10T1/2 cells.

In Vitro Cell Dev Biol Anim. 2013;49(4):295-305.

2013

Kumar S, Nigam A, Priya S, Bajpai P, Budhwar R. Lipoic acid prevents Cr(6+) induced cell transformation and the associated genomic dysregulation.

Environ Toxicol Pharmacol. 2013;36(1):182-93.

2013

Annadurai RS, Neethiraj R, Jayakumar V, et al. De Novo transcriptome assembly (NGS) of Curcuma longa L. rhizome reveals novel transcripts related to anticancer and antimalarial terpenoids.

PLoS ONE. 2013;8(2):e56217.

2013

Thakur J, Sanyal K. Efficient neocentromere formation is suppressed by gene conversion to maintain centromere function at native physical chromosomal loci in Candida albicans.

Genome Res. 2013;23(4):638-52.

2013

Deepa PR, Vandhana S, Krishnakumar S. Fatty acid synthase inhibition induces differential expression of genes involved in apoptosis and cell proliferation in ocular cancer cells.

Nutr Cancer. 2013;65(2):311-6.

2013

A Targeted Enrichment Strategy for Massively Parallel Sequencing of Angiosperm Plastid Genomes Jain S, Chodisetti SB, Agrewala JN. Combinatorial signaling through TLR-2 and CD86 augments activation and differentiation of resting B cells.

PLoS ONE. 2013;8(1):e54392.

2013

Satija NK, Sharma D, Afrin F, Tripathi RP, Gangenahalli G. High throughput transcriptome profiling of lithium stimulated human mesenchymal stem cells reveals priming towards osteoblastic lineage.

PLoS ONE. 2013;8(1):e55769.

2013

Beta M, Venkatesan N, Vasudevan M, Vetrivel U, Khetan V, Krishnakumar S. Identification and Insilico Analysis of Retinoblastoma Serum microRNA Profile and Gene Targets Towards Prediction of Novel Serum Biomarkers.

Bioinform Biol Insights. 2013;7:21-34.

2013

Basu M, Roy SS. Wnt/β-catenin pathway is regulated by PITX2 homeodomain protein and thus contributes to the proliferation of human ovarian adenocarcinoma cell, SKOV-3.

J Biol Chem. 2013;288(6):4355-67.

2013

2012 Publications

Agarwal G, Jhanwar S, Priya P, et al. Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers.

PLoS ONE. 2012;7(12):e52443.

2012

Pluess-li Y, Bongiovanni S, Oakeley EJ, Johnson KJ, Staedtler F. The virtuous technology cycle concept and its application in next-generation sequencing.

Drug Discov Today. 2012;17(17-18):1015-22.

2012

Antibiotic Resistance in Co-Culture Biofilm of Listeria monocytogenesJ0161

2012

Genome sequence and comparative genomics of a Salmonella enterica serovar Typhi Strain in Malaysia

2012

Majumdar SD, Vashist A, Dhingra S, et al. Appropriate DevR (DosR)-mediated signaling determines transcriptional response, hypoxic viability and virulence of Mycobacterium tuberculosis.

PLoS ONE. 2012;7(4):e35847.

2012

Rai R, Ranjan M, Pradhan BB, Chatterjee S. Atypical regulation of virulence-associated functions by a diffusible signal factor in Xanthomonas oryzae pv. oryzae.

Mol Plant Microbe Interact. 2012;25(6):789-801.

2012

Kato-maeda M, Shanley CA, Ackart D, et al. Beijing sublineages of Mycobacterium tuberculosis differ in pathogenicity in the guinea pig.

Clin Vaccine Immunol. 2012;19(8):1227-37.

2012

Mishra S, Bhagavat R, Chandra N, Vijayarangan N, Rajeswari H, Ajitkumar P. Cloning, expression, purification, and biochemical characterisation of the FIC motif containing protein of Mycobacterium tuberculosis.

Protein Expr Purif. 2012;86(1):58-67.

2012

Rao PP, Reddy YN, Hegde NR. Complete genome sequence of bluetongue virus serotype 9: implications for serotyping.

J Virol. 2012;86(15):8333.

2012

Jain R, Dey B, Tyagi AK. Development of the first oligonucleotide microarray for global gene expression profiling in guinea pigs: defining the transcription signature of infectious diseases.

BMC Genomics. 2012;13:520.

2012

Development of TILLING by sequencing platform towards enhanced leaf yield in tobacco.

2012

Kumar S, Randhawa A, Ganesan K, Raghava GP, Mondal AK. Draft genome sequence of salt-tolerant yeast Debaryomyces hansenii var. hansenii MTCC 234.

Eukaryotic Cell. 2012;11(7):961-2.

2012

James R, Vishwakarma S, Chivukula IV, et al. EGFR targeting monoclonal antibody combines with an mTOR inhibitor and potentiates tumor inhibition by acting on complementary signaling hubs.

Cancer Med. 2012;1(2):114-27.

2012

Robinson N, Sahoo PK, Baranski M, et al. Expressed sequences and polymorphisms in rohu carp (Labeo rohita, Hamilton) revealed by mRNA-seq.

Mar Biotechnol. 2012;14(5):620-33.

2012

Tirumalai PS, Prakash S. Expression of virulence genes by Listeria monocytogenes J0161 in natural environment.

Braz J Microbiol. 2012;43(2):834-43.

2012

Sreenivasan S, Thirumalai K, Krishnakumar S. Expression profile of genes regulated by curcumin in Y79 retinoblastoma cells.

Nutr Cancer. 2012;64(4):607-16.

2012

Baddam R, Kumar N, Thong KL, et al. Genetic fine structure of a Salmonella enterica serovar Typhi strain associated with the 2005 outbreak of typhoid fever in Kelantan, Malaysia.

J Bacteriol. 2012;194(13):3565-6.

2012

Yap KP, Gan HM, Teh CS, et al. Genome sequence and comparative pathogenomics analysis of a Salmonella enterica Serovar Typhi strain associated with a typhoid carrier in Malaysia.

J Bacteriol. 2012;194(21):5970-1.

2012

Kumar S, Kushwaha H, Bachhawat AK, Raghava GP, Ganesan K. Genome sequence of the oleaginous red yeast Rhodosporidium toruloides MTCC 457.

Eukaryotic Cell. 2012;11(8):1083-4.

2012

Dutta P, Tanti GK, Sharma S, et al. Global epigenetic changes induced by SWI2/SNF2 inhibitors characterize neomycin-resistant mammalian cells.

PLoS ONE. 2012;7(11):e49822.

2012

Hendre PS, Kamalakannan R, Varghese M. High-throughput and parallel SNP discovery in selected candidate genes in Eucalyptus camaldulensis using Illumina NGS platform.

Plant Biotechnol J. 2012;10(6):646-56.

2012

Ladha J, Sinha S, Bhat V, Donakonda S, Rao SM. Identification of genomic targets of transcription factor AEBP1 and its role in survival of glioma cells.

Mol Cancer Res. 2012;10(8):1039-51.

2012

Yap KP, Teh CS, Baddam R, et al. Insights from the genome sequence of a Salmonella enterica serovar Typhi strain associated with a sporadic case of typhoid fever in Malaysia.

J Bacteriol. 2012;194(18):5124-5.

2012

Stamm P, Ravindran P, Mohanty B, Tan EL, Yu H, Kumar PP. Insights into the molecular mechanism of RGL2-mediated inhibition of seed germination in Arabidopsis thaliana.

BMC Plant Biol. 2012;12:179.

2012

Mechanism Of Action Of Plumbagin In Brca1 Blocked Ovarian Cancer Cells: An Analysis By Suppression Subtractive Hybridization (Ssh) And Micro Array.

2012

Vandhana S, Lakshmi TS, Indra D, Deepa PR, Krishnakumar S. Microarray analysis and biochemical correlations of oxidative stress responsive genes in retinoblastoma.

Curr Eye Res. 2012;37(9):830-41.

2012

Venkatesan N, Krishnakumar S, Deepa PR, Deepa M, Khetan V, Reddy MA. Molecular deregulation induced by silencing of the high mobility group protein A2 gene in retinoblastoma cells.

Mol Vis. 2012;18:2420-37.

2012

Krishna S, Nair A, Cheedipudi S, et al. Deep sequencing reveals unique small RNA repertoire that is regulated during head regeneration in Hydra magnipapillata.

Nucleic Acids Res. 2013;41(1):599-616.

2012

Malhotra V, Okon BP, Clark-curtiss JE. Mycobacterium tuberculosis protein kinase K enables growth adaptation through translation control.

J Bacteriol. 2012;194(16):4184-96.

2012

Annadurai RS, Jayakumar V, Mugasimangalam RC, et al. Next generation sequencing and de novo transcriptome analysis of Costus pictus D. Don, a non-model plant with potent anti-diabetic properties.

BMC Genomics. 2012;13:663.

2012

Kumar N, Mukhopadhyay AK, Patra R, et al. Next-generation sequencing and de novo assembly, genome organization, and comparative genomic analyses of the genomes of two Helicobacter pylori isolates from duodenal ulcer patients in India.

J Bacteriol. 2012;194(21):5963-4.

2012

Shashni R, Mishra S, Kalayani BS, Sen R. Suppression of in vivo Rho-dependent transcription termination defects: evidence for kinetically controlled steps.

Microbiology (Reading, Engl). 2012;158(Pt 6):1468-81.

2012

Diggle CP, Parry DA, Logan CV, et al. Prostaglandin transporter mutations cause pachydermoperiostosis with myelofibrosis.

Hum Mutat. 2012;33(8):1175-81.

2012

Hu S, Xie G, Zhang DX, et al. Synthesis and biological evaluation of crown ether fused quinazoline analogues as potent EGFR inhibitors.

Bioorg Med Chem Lett. 2012;22(19):6301-5.

2012

Castellana S, Romani M, Valente EM, Mazza T. A solid quality-control analysis of AB SOLiD short-read sequencing data.

Brief Bioinformatics. 2013;14(6):684-95.

2012

Mittal D, Madhyastha DA, Grover A. Genome-wide transcriptional profiles during temperature and oxidative stress reveal coordinated expression patterns and overlapping regulons in rice.

PLoS ONE. 2012;7(7):e40899.

2012

Patra T, Koley H, Ramamurthy T, Ghose AC, Nandy RK. The Entner-Doudoroff pathway is obligatory for gluconate utilization and contributes to the pathogenicity of Vibrio cholerae.

J Bacteriol. 2012;194(13):3377-85.

2012

Time-dependant gene expression pattern of Listeria monocytogenes J0161 in biofilms

2012

Gissot M, Walker R, Delhaye S, Huot L, Hot D, Tomavo S. Toxoplasma gondii chromodomain protein 1 binds to heterochromatin and colocalises with centromeres and telomeres at the nuclear periphery.

PLoS ONE. 2012;7(3):e32671.

2012

Bhaskar AS, Gupta N, Rao PV. Transcriptomic profile of host response in mouse brain after exposure to plant toxin abrin.

Toxicology. 2012;299(1):33-43.

2012

Baddam R, Thong KL, Avasthi TS, et al. Whole-genome sequences and comparative genomics of Salmonella enterica serovar Typhi isolates from patients with fatal and nonfatal typhoid fever in Papua New Guinea.

J Bacteriol. 2012;194(18):5122-3.

2012

Mittal D, Madhyastha DA, Grover A. Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.

Plant Sci. 2012;197:102-13.

2012

2011 Publications

The development of molecular tools for detecting the impacts of municipal wastewater effluents(MWWE) on rainbow darter (Etheostoma caeruleum)

2011

Leibman D, Wolf D, Saharan V, et al. A high level of transgenic viral small RNA is associated with broad potyvirus resistance in cucurbits.

Mol Plant Microbe Interact. 2011;24(10):1220-38.

2011

Bairwa G, Kaur R. A novel role for a glycosylphosphatidylinositol-anchored aspartyl protease, CgYps1, in the regulation of pH homeostasis in Candida glabrata.

Mol Microbiol. 2011;79(4):900-13.

2011

Gkikopoulos T, Schofield P, Singh V, et al. A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization.http://www.sciencemag.org/content/333/6050/1758.abstract

Science. 2011;333(6050):1758-60.

2011

Kedia-mokashi NA, Mugasimangalam R, Aiyaz M, Mukherjee S, Balasinor NH. Aberrant expression of imprinted genes in post-implantation rat embryos.

Life Sci. 2011;88(13-14):634-43.

2011

Moore DA, Shah NS. Alternative methods of diagnosing drug resistance–what can they do for me?.

J Infect Dis. 2011;204 Suppl 4:S1110-9.

2011

Anand T, Vijayaraghavan R, Rao PV, Bansal I, Bhattacharya BK. Attenuation of sulfur mustard toxicity by S-2(2-aminoethylamino)ethyl phenyl sulfide (DRDE-07) in mouse liver.

Toxicol Mech Methods. 2011;21(8):596-605.

2011

Hameed S, Dhamgaye S, Singh A, Goswami SK, Prasad R. Calcineurin signaling and membrane lipid homeostasis regulates iron mediated multidrug resistance mechanisms in Candida albicans.

PLoS ONE. 2011;6(4):e18684.

2011

Kumar NV, Rangarajan PN. Catabolite repression of phosphoenolpyruvate carboxykinase by a zinc finger protein under biotin- and pyruvate carboxylase-deficient conditions in Pichia pastoris.

Microbiology (Reading, Engl). 2011;157(Pt 12):3361-9.

2011

Jain S, Chodisetti SB, Agrewala JN. CD40 signaling synergizes with TLR-2 in the BCR independent activation of
resting B cells.

PLoS ONE. 2011;6(6):e20651.

2011

Kaur K, Pandey AK, Srivastava S, Srivastava AK, Datta M. Comprehensive miRNome and in silico analyses identify the Wnt signaling pathway to be altered in the diabetic liver.

Mol Biosyst. 2011;7(12):3234-44.

2011

Mirbahai L, Williams TD, Zhan H, Gong Z, Chipman JK. Comprehensive profiling of zebrafish hepatic proximal promoter CpG island methylation and its modification during chemical carcinogenesis.

BMC Genomics. 2011;12:3.

2011

Garg R, Patel RK, Tyagi AK, Jain M. De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification.

DNA Res. 2011;18(1):53-63.

2011

Differential Coexpression of Mex Efflux Pumps in a Clinical Strain of Metallo-β-lactamase-Producing Pseudomonas aeruginosa During the Stepwise Evolution of Resistance to Aminoglycosides

2011

Karim AF, Chandra P, Chopra A, et al. Express path analysis identifies a tyrosine kinase Src-centric network regulating divergent host responses to Mycobacterium tuberculosis infection.

J Biol Chem. 2011;286(46):40307-19.

2011

Siddavattam D, Karegoudar TB, Mudde SK, et al. Genome of a novel isolate of Paracoccus denitrificans capable of degrading N,N-dimethylformamide.

J Bacteriol. 2011;193(19):5598-9.

2011

Avasthi TS, Kumar N, Baddam R, et al. Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114
from India.

J Bacteriol. 2011;193(16):4272-3.

2011

Avasthi TS, Devi SH, Taylor TD, et al. Genomes of two chronological isolates (Helicobacter pylori 2017 and 2018) of the West African Helicobacter pylori strain 908 obtained from a single patient.

J Bacteriol. 2011;193(13):3385-6.

2011

Hendre PS, Kamalakannan R, Varghese M. High-throughput and parallel SNP discovery in selected candidate genes in Eucalyptus camaldulensis using Illumina NGS platform.

Plant Biotechnol J. 2012;10(6):646-56.

2011

Shang S, Harton M, Tamayo MH, et al. Increased Foxp3 expression in guinea pigs infected with W-Beijing strains of M. tuberculosis.

Tuberculosis (Edinb). 2011;91(5):378-85.

2011

Paranjape AN, Mandal T, Mukherjee G, Kumar MV, Sengupta K, Rangarajan A. Introduction of SV40ER and hTERT into mammospheres generates breast cancer cells with stem cell properties.

Oncogene. 2012;31(15):1896-909.

2011

Zhidkov I, Nagar T, Mishmar D, Rubin E. MitoBamAnnotator: A web-based tool for detecting and annotating heteroplasmy in human mitochondrial DNA sequences.

Mitochondrion. 2011;11(6):924-8.

2011

Kumar S, Dey D, Hasan G. Patterns of gene expression in Drosophila InsP3 receptor mutant larvae reveal a role for InsP3 signaling in carbohydrate and energy metabolism.

PLoS ONE. 2011;6(8):e24105.

2011

Marbaniang CN, Gowrishankar J. Role of ArgP (IciA) in lysine-mediated repression in Escherichia coli.

J Bacteriol. 2011;193(21):5985-96.

2011

Heine H. TLRs, NLRs and RLRs: innate sensors and their impact on allergic diseases–a current view.

Immunol Lett. 2011;139(1-2):14-24.

2011

Regulated expression of CXCR4 constitutive active mutants revealed the up-modulated chemotaxis and up-regulation of genes crucial for CXCR4 mediated homing and engraftment of hematopoietic stem/progenitor cells.

2011

Sharma A, Mishra M, Ram KR, Kumar R, Abdin MZ, Chowdhuri DK. Transcriptome analysis provides insights for understanding the adverse effects of endosulfan in Drosophila melanogaster.

Chemosphere. 2011;82(3):370-6.

2011

Sen M, Shah B, Rakshit S, et al. UDP-glucose 4, 6-dehydratase activity plays an important role in maintaining cell wall integrity and virulence of Candida albicans.

PLoS Pathog. 2011;7(11):e1002384.

2011

Nageshan RK, Roy N, Hehl AB, Tatu U. Post-transcriptional repair of a split heat shock protein 90 gene by
mRNA trans-splicing.

J Biol Chem. 2011;286(9):7116-22.

2011

Babu MM, Sridhar J, Gunasekaran P. Global transcriptome analysis of Bacillus cereus ATCC 14579 in response to silver nitrate stress.

J Nanobiotechnology. 2011;9:49.

2011

Bajaj J, Maliekal TT, Vivien E, et al. Notch signaling in CD66+ cells drives the progression of human cervical cancers.

Cancer Res. 2011;71(14):4888-97.

2011

2010 Publications

Kumar N, Pethe P, Bhartiya D. Role of TGFbeta and myofibroblasts in supporting the propagation of human embryonic stem cells in vitro.

Int J Dev Biol. 2010;54(8-9):1329-36.

2010

Nair P, Melarkode R, Rajkumar D, Montero E. CD6 synergistic co-stimulation promoting proinflammatory response is modulated without interfering with the activated leucocyte cell adhesion molecule interaction.

Clin Exp Immunol. 2010;162(1):116-30.

2010

Ordway DJ, Shanley CA, Caraway ML, et al. Evaluation of standard chemotherapy in the guinea pig model of tuberculosis.

Antimicrob Agents Chemother. 2010;54(5):1820-33.

2010

Bapat SA, Krishnan A, Ghanate AD, Kusumbe AP, Kalra RS. Gene expression: protein interaction systems network modeling identifies transformation-associated molecules and pathways in ovarian cancer.

Cancer Res. 2010;70(12):4809-19.

2010

Saha B, Jyothi prasanna S, Chandrasekar B, Nandi D. Gene modulation and immunoregulatory roles of interferon gamma.

Cytokine. 2010;50(1):1-14.

2010

Sirota-madi A, Olender T, Helman Y, et al. Genome sequence of the pattern forming Paenibacillus vortex bacterium reveals potential for thriving in complex environments.

BMC Genomics. 2010;11:710.

2010

Mitra M, Kandalam M, Verma RS, Umamaheswari K, Krishnakumar S. Genome-wide changes accompanying the knockdown of Ep-CAM in retinoblastoma.

Mol Vis. 2010;16:828-42.

2010

Ladha J, Donakonda S, Agrawal S, et al. Glioblastoma-specific protein interaction network identifies PP1A and CSK21 as connecting molecules between cell cycle-associated genes.

Cancer Res. 2010;70(16):6437-47.

2010

Interleukin-4 induced leukocyte differentiation – Näytä kaikki kuvailutiedot.

2010

Method for analyzing dynamic detectable events at the single molecule level – United Stated Patent , US 7668697 B2.

2010

Methylketone synthase, production of methylketones in plants and bacteria.

2010

Langmann T, Di gioia SA, Rau I, et al. Nonsense mutations in FAM161A cause RP28-associated recessive retinitis
pigmentosa.

Am J Hum Genet. 2010;87(3):376-81.

2010

Vempati RK, Jayani RS, Notani D, Sengupta A, Galande S, Haldar D. p300-mediated acetylation of histone H3 lysine 56 functions in DNA damage response in mammals.

J Biol Chem. 2010;285(37):28553-64.

2010

Ahlfors H, Limaye A, Elo LL, et al. SATB1 dictates expression of multiple genes including IL-5 involved in human T helper cell differentiation.

Blood. 2010;116(9):1443-53.

2010

Tripathy MK, Ahmed Z, Ladha JS, Mitra D. The cell death regulator GRIM-19 is involved in HIV-1 induced T-cell apoptosis.

Apoptosis. 2010;15(12):1453-60.

2010

Notani D, Gottimukkala KP, Jayani RS, et al. Global regulator SATB1 recruits beta-catenin and regulates T(H)2 differentiation in Wnt-dependent manner.

PLoS Biol. 2010;8(1):e1000296.

2010

Systems for gene expression array analysis – United States Patent, US 7856320 B2.

2010

Chattopadhyay I, Singh A, Phukan R, et al. Genome-wide analysis of chromosomal alterations in patients with esophageal squamous cell carcinoma exposed to tobacco and betel quid from high-risk area in India.

Mutat Res. 2010;696(2):130-8.

2010

2009 Publications

Radhakrishnan A, Badhrinarayanan N, Biswas J, Krishnakumar S. Analysis of chromosomal aberration (1, 3, and 8) and association of microRNAs in uveal melanoma.

Mol Vis. 2009;15:2146-54.

2009

Purbey PK, Singh S, Notani D, Kumar PP, Limaye AS, Galande S. Acetylation-dependent interaction of SATB1 and CtBP1 mediates transcriptional repression by SATB1

Mol Cell Biol. 2009;29(5):1321-37.

2009

Kashyap MK, Marimuthu A, Kishore CJ, et al. Genomewide mRNA profiling of esophageal squamous cell carcinoma for identification of cancer biomarkers.

Cancer Biol Ther. 2009;8(1):36-46.

2009

Core promoter variants (A-20C, T-18C and G-6A) of the angiotensinogen (AGT) gene are not significantly associated with hypertension in patients of Tamilnadu.

2009

Mittal D, Chakrabarti S, Sarkar A, Singh A, Grover A. Heat shock factor gene family in rice: genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses.

Plant Physiol Biochem. 2009;47(9):785-95.

2009

Eswarappa SM, Karnam G, Nagarajan AG, Chakraborty S, Chakravortty D. lac repressor is an antivirulence factor of Salmonella enterica: its role in the evolution of virulence in Salmonella.

PLoS ONE. 2009;4(6):e5789.

2009

Kaul-ghanekar R, Singh S, Mamgain H, Jalota-badhwar A, Paknikar KM, Chattopadhyay S. Tumor suppressor protein SMAR1 modulates the roughness of cell surface: combined AFM and SEM study.

BMC Cancer. 2009;9:350.

2009

Ben-israel I, Yu G, Austin MB, et al. Multiple biochemical and morphological factors underlie the production of methylketones in tomato trichomes.

Plant Physiol. 2009;151(4):1952-64.

2009

Transcriptional Regulation and the Role of Galactose Metabolism in the Virulence of Candida albicans.

2009

Methylketone Biosynthesis in Tomato F2 Segregant Populations.

2009

Chattopadhyay I, Phukan R, Singh A, et al. Molecular profiling to identify molecular mechanism in esophageal cancer with familial clustering.

Oncol Rep. 2009;21(5):1135-46.

2009

The joint tissue microarray gene chips explore the molecular mechanism of the development of Barrett’s esophagus occurs, Wang Xingwei,

2009

Purbey PK, Singh S, Notani D, Kumar PP, Limaye AS, Galande S. Acetylation-dependent interaction of SATB1 and CtBP1 mediates transcriptional repression by SATB1.

Mol Cell Biol. 2009;29(5):1321-37.

2009

2008 Publications

Bonfils C, Kalita A, Dubay M, et al. Evaluation of the pharmacodynamic effects of MGCD0103 from preclinical models to human using a novel HDAC enzyme assay.

Clin Cancer Res. 2008;14(11):3441-9.

2008

Verma-gaur J, Rao SN, Taya T, Sadhale P. Genomewide recruitment analysis of Rpb4, a subunit of polymerase II in Saccharomyces cerevisiae, reveals its involvement in transcription elongation.

Eukaryotic Cell. 2008;7(6):1009-18.

2008

Lahiri A, Das P, Chakravortty D. The LysR-type transcriptional regulator Hrg counteracts phagocyte oxidative burst and imparts survival advantage to Salmonella enterica serovar Typhimurium.

Microbiology (Reading, Engl). 2008;154(Pt 9):2837-46.

2008

Development of Prodrug 4-Chloro-3-(5-methyl-3-{[4-(2-pyrrolidin-1-ylethoxy)phenyl]amino}-1,2,4-benzotriazin-7-yl)phenyl Benzoate (TG100801) : A Topically Administered Therapeutic Candidate in Clinical Trials for the Treatment of Age-Related Macular Degeneration.

2008

Singh K, Mogare D, Giridharagopalan RO, Gogiraju R, Pande G, Chattopadhyay S. p53 target gene SMAR1 is dysregulated in breast cancer: its role in cancer cell migration and invasion.

PLoS ONE. 2007;2(7):e660.

2008

2027 Publications

Chattopadhyay I, Kapur S, Purkayastha J, et al. Gene expression profile of esophageal cancer in North East India by cDNA microarray analysis.

World J Gastroenterol. 2007;13(9):1438-44.

2007

Jalota-badhwar A, Kaul-ghanekar R, Mogare D, Boppana R, Paknikar KM, Chattopadhyay S. SMAR1-derived P44 peptide retains its tumor suppressor function through modulation of p53.

J Biol Chem. 2007;282(13):9902-13.

2007

Mantelingu K, Reddy BA, Swaminathan V, et al. Specific inhibition of p300-HAT alters global gene expression and represses HIV replication.