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Sanjeev Kumar Shukla, Shubhra Shukla, Rehan Khan, Anuj Ahuja, Lakshya Veer Singh, Nitin M. Kamble, Anupam Dhasmana, Naveen Sharma, Bipin Chand, Ajay Vir Singh. Pathway analysis of differentially expressed genes in Mycobacterium bovis challenged bovine macrophages (2017)
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Ella, Krishna Murthy Kandaswamy, Sumathy Inactivated chikungunya viruses (CHIKV) comprising an E1-K211E mutation.
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K. Polavarapu, , A. Nalini, S. MK, S. Narayan Rao, V. Preethish-Kumar, D. Sekar, V. Sundar, S. Vengalil, S. Nashi, V. Krishnamurthy. A next generation sequencing based mutational analysis in Duchenne and Becker muscular dystrophy.
Journal of the Neurological Sciences (2017).
2017
Jyoti Kureel, Aijaz A. John, Ravi Prakash, Divya Singh. MiR 376c inhibits osteoblastogenesis by targeting Wnt3 and ARF-GEF-1 -facilitated augmentation of beta-catenin transactivation.
Journal of Cellular Biochemistry (2017).
2017
Soumyadev Sarkar, Somnath Chakravorty, Avishek Mukherjee, Debanjana Bhattacharya, Semantee Bhattacharya, Ratan Gachhu. De novo RNA-Seq based transcriptome analysis of Papiliotrema laurentii strain RY1 under nitrogen starvation.
Gene (2017).
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Rathinasamy Karpagam, Kalimuthu Jawaharraja, Balasubramaniem Ashokkumar, Jayavel Sridhar, Perumal Varalakshmi, Unraveling the lipid and pigment biosynthesis in Coelastrella sp. M-60: Genomics-enabled transcript profiling.
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2017
G Kiran Kumar Reddy, Y V Nancharaiah. Sustainable bioreduction of toxic levels of chromate in a denitrifying granular sludge reactor.
Environmental Science and Pollution Research (2017).
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P.A. Sutton, P.V. Jithesh1, R.P. Jones, J.P. Evans, D. Vimalachandran, H.Z. Malik, B.K. Park, C.E. Goldring, D.H. Palmer, N.R. Kitteringham. Exome sequencing of synchronously resected primary colorectal tumours and colorectal liver metastases to inform oncosurgical management.
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Poulomi Banerjee, Harshini Surendran, Kapil Bharti, Kaoru Morishita, Anurag Varshney, Rajarshi Pal. Long non-coding RNA RP11-380D23.2 drives distal-proximal patterning of the lung by regulating PITX2 expression.
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Deepika Singh, Debajyoti Kabiraj, Pragya Sharma, Hasnahana Chetia, Ponnala Vimal Mosahari, Kartik Neog, Utpal Bora. The mitochondrial genome of Muga silkworm (Antheraea assamensis) and its comparative analysis with other lepidopteran insects.
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Dillon F. Da Fonte, Christopher J. Martyniuk, Lei Xing, Adrian Pelin, Nicolas Corradi, Wei Hu & Vance L. Trudeau. Secretoneurin A regulates neurogenic and inflammatory transcriptional networks in goldfish (Carassius auratus) radial glia.
Nature’s Scientific Reports (2017).
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Jyoti Kode, Navin Khattry, Ashish Bakshi, Vasanti Amrutkar, Bhausaheb Bagal, Rohini Karandikar, Pallavi Rane, Nobutaka Fujii, Shubhada Chiplunkar. Study of stem cell homing & self-renewal marker gene profile of ex vivo expanded human CD34+ cells manipulated with a mixture of cytokines & stromal cell-derived factor 1.
Indian Journal of Medical Research (2017).
2017
Tarique Anwar, Bijoya Sen, Savera Aggarwal, Rhisita Nath, Ajay Katoch, Mohamed Aiyaz, Nirupma Trehanpati, Sanjeev Khosla, Gayatri Ramakrishnan. Differentially regulated gene expression in quiescence vs. senescence and identification of ARID5A as a quiescence associated marker.
Journal of Cellular physiology (2017).
2017
Rama Chandra Laha, Surajit De Mandal, Lalhmanghai Ralte, Laldinfeli Ralte, Nachimuthu Senthil Kumar, Guruswami Gurusubramanian, Ramalingam Satishkumar, Raja Mugasimangalam and Nagesh Aswathnarayana Kuravadi. Correction to: Meta-barcoding in combination with palynological inference is a potent diagnostic marker for honey floral composition.
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Susheel Kumar Singh, Sunita Singh Dhawan. Analyzing trichomes and spatio-temporal expression of a cysteine protease gene Mucunain in Mucuna pruriens L.
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Kuppusamy Sivasankaran, Pratheesh Mathew, Sekar Anand, Stanislaus Antony Ceasar, Soosaimanikam Mariapackiam, Savarimuthu Ignacimuthu. Complete mitochondrial genome sequence of fruit-piercing moth Eudocima phalonia (Linnaeus, 1763) (Lepidoptera: Noctuoidea).
Genomics Data (2017).
2017
Tapan Kumar Mondal, Hukam Chand Rawal, Kishor Gaikwad, Tilak Raj Sharma, Nagendra Kumar Singh. First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza.
2017
Udita Chandra, Aarti Yadav, Devanand Kumar, Swati Saha. Cell cycle stage-specific transcriptional activation of cyclins mediated by HAT2- dependant H4K10 acetylation of promoters in Leishmania donovani.
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2017
Gursharan Kaur, Vineet Kumar, Amit Arora, Ajay Tomar, Ashish, Runa Sur & Dipak Dutta. Affected energy metabolism under manganese stress governs cellular toxicity.
Natures Scientific Reports (2017).
2017
Surender Kumar, BL Subbarao & Vipin Hallan. Molecular characterization of emaraviruses associated with Pigeonpea sterility mosaic disease.
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Nizar Haddad, Noureddine Adjlane, Wahida Loucif-Ayad, Abhinandita Dash, S. Naganeeswaran, Balaji Rajashekar, Kosai Ali Ahmed Al-Nakeeb, Thomas Sicheritz-Pontén. Mitochondrial genome of the North African Sahara Honeybee, Apis mellifera sahariensis (Hymenoptera: Apidae).
Mitochondrial Dna Part B (2017).
2017
Sumit Kumar, Rachapudi Venkata Sreeharsha, Shalini Mudalkar, Prasad M. Sarashetti & Attipalli Ramachandra Reddy. Molecular insights into photosynthesis and carbohydrate metabolism in Jatropha curcas grown under elevated CO2 using transcriptome sequencing and assembly.
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2017
M. Sarvajith, G. Kiran Kumar Reddy, Y.V. Nancharaiah. Textile dye biodecolourization and ammonium removal over nitrite in aerobic granular sludge sequencing batch reactors.
Journal of Hazardous Materials (2017).
2017
Shumei Chia, Joo-Leng Low, Xiaoqian Zhang, Xue-Lin Kwang, Fui-Teen Chong, Ankur Sharma, Denis Bertrand, Shen Yon Toh, Hui-Sun Leong, Matan T. Thangavelu, Jacqueline S. G. Hwang, Kok-Hing Lim, Thakshayeni Skanthakumar, Hiang-Khoon Tan, Yan Su, Siang Hui Choo, Hannes Hentze, Iain B. H. Tan, Alexander Lezhava, Patrick Tan, Daniel S. W. Tan, Giridharan Periyasamy, Judice L. Y. Koh, N. Gopalakrishna Iyer & Ramanuj DasGupta. Phenotype-driven precision oncology as a guide for clinical decisions one patient at a time.
Nature Communications (2017).
2017
R. V. Sreedhar, P. Prasad, L. Prasanna Anjaneya Reddy, Ram Rajasekharan & Malathi Srinivasan. Unravelling a stearidonic acid – rich triacylglycerol biosynthetic pathway in the developing seeds of Buglossoides arvensis: A transcriptomic landscape.
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Sana Parveen, Dhiviya Vedagiri, Hitha Gopalan Nair, Haripriya Parthasarathy, and Krishnan Harinivas Harshan. Unconventional MAPK-GSK-3β Pathway Behind Atypical Epithelial-Mesenchymal Transition In Hepatocellular Carcinoma.
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Dhiru Bansal, Jahnavi Kulkarni, Kavana Nadahalli, Vairavan Lakshmanan, Srikar Krishna, Vidyanand Sasidharan, Jini Geo, Shilpa Dilipkumar, Renu Pasricha, Akash Gulyani, Srikala Raghavan and Dasaradhi Palakodeti. Cytoplasmic poly (A)-binding protein critically regulates epidermal maintenance and turnover in the planarian Schmidtea mediterranea.
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Abhishek Ojha, Deepak Kumar Sinha, A.P. Padmakumari, J.S. Bentur and Suresh Nair. Bacterial Community Structure in the Asian Rice Gall Midge Reveals a Varied Microbiome Rich in Proteobacteria.
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Rajeswara Babu Mythri, N. Raghunath, Santosh C. Narwade, M.D. Pandareesh, K. Rajesh Sabitha, Mohamad Aiyaz, Bipin Chand, Manas Sule, Krittika Ghosh, Senthil Kumar, M.S. Bhagya, Soundarya Soundararajan, Phalguni Anand Alladi, Meera Purushottam, Narayanappa Gayathri, Deepti D. Deobagkar, T. Rao Laxmi and Muchukunte Mukunda Srinivas Bharath. Manganese and 1-methyl-4-phenylpyridinium (MPP+) induced neurotoxicity indicate differences in morphological, electrophysiological and genome-wide alterations: Implications for idiopathic Parkinson’s disease.
Journal of Neurochemistry (2017).
2017
Swati ShreePadhi, Souvick Roy, Madhabananda Kar, Arka Saha, Shomereeta Roy, Amit Adhya, Manas Baisakh, Birendranath Banerjee. Role of CDKN2A/p16 expression in the prognostication of oral squamous cell carcinoma.
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2017
Archita Srivastava, Shabnam Sircaik, Farha Husain, Edwina Thomas, Shivani Ror, Sumit Rastogi, Darakshan Alim, Priyanka Bapat, David R. Andes, Clarissa J. Nobile, Sneh L. Panwar. Distinct roles of the 7-transmembrane receptor protein Rta3 in regulating the asymmetric distribution of phosphatidylcholine across the plasma membrane and biofilm formation in Candida albicans.
cellular microbiology (2017)
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Aditi Madan, Divesh Thimmaiya, Ari Franco-Cea, Mohammed Aiyaz, Prabodh Kumar, John C. Sparrow, Upendra Nongthomba.Transcriptome analysis of IFM-specific actin and myosin nulls in Drosophila melanogaster unravels lesion-specific expression blueprints across muscle mutations.
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Gowthaman Govindarajan, Saumi Mathews, Karthik Srinivasan, Kim Ramasamy, Sundaresan Periasamy. Establishment of human retinal mitoscriptome gene expression signature for diabetic retinopathy using cadaver eyes.
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Sujay Paul, Yvette Ludena, Gretty K. Villena, Fengan Yu, David H. Sherman and Marcel Gutierrez-Correa. High-quality draft genome sequence of a biofilm forming lignocellulolytic Aspergillus niger strain ATCC 10864.
Standards in Genomic Sciences (2017).
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Balachandran Karpaga Raja Sundari, Srivani Telapolu, Bilikere S. Dwarakanath, Sadras. P. Thyagarajan. Cytotoxic and Antioxidant Effects in Various Tissue Extracts of Plumbago zeylanica: Implications for Anticancer Potential.
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Vasudevan Prabhakaran1, Douglas A. Drevets, Govindan Ramajayam, Josephine J. Manoj, Michael P. Anderson, Jay S. Hanas4, Vedantam Rajshekhar, Anna Oommen, Helene Carabin.Comparison of monocyte gene expression among patients with neurocysticercosisassociated epilepsy, Idiopathic Epilepsy and idiopathic headaches in India.
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Sumanti Gupt, Anirban Bhar, Moniya Chatterjee, Amartya Ghosh, Sampa Das.Transcriptomic dissection reveals wide spread differential expression in chickpea during early time points of Fusarium oxysporum f. sp.
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Modhumita Ghosh Dasgupta, Veeramuthu Dharanishanthi. Identification of PEG-induced water stress responsive transcripts using co-expression network in Eucalyptus grandis.
Gene (2017).
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Deepti Sarkar, Ranjan Kumar Maji, Sayani Dey, Arijita Sarkar, Zhumur Ghosh, Pallob Kundu. Integrated miRNA and mRNA expression profiling reveals the response regulators of a susceptible tomato cultivar to early blight disease.
DNA Research (2017).
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Gajendra Singh Jeena, Shahnoor Fatima, Pragya Tripathi, Swati Upadhyay and Rakesh Kumar Shukla.Comparative transcriptome analysis of shoot and root tissue of Bacopa monnieri identifies potential genes related to triterpenoid saponin biosynthesis.
BMC Genomics (2017).
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Indraneel Mittra, Urmila Samant, Suvarna Sharma, Gorantla V Raghuram, Tannistha Saha, Pritishkumar Tidke, Namrata Pancholi, Deepika Gupta, Preeti Prasannan, Ashwini Gaikwad, Nilesh Gardi, Rohan Chaubal, Pawan Upadhyay, Kavita Pal, Bhagyeshri Rane, Alfina Shaikh, Sameer Salunkhe, Shilpee Dutt, Pradyumna K Mishra, Naveen K Khare, Naveen K Nair & Amit Dutt. Cell-free chromatin from dying cancer cells integrate into genomes of bystander healthy cells to induce DNA damage and inflammation.
Cell Death Discovery (2017).
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Shailaja Hittalmani†Email author, H. B. Mahesh†Email author, Meghana Deepak Shirke, Hanamareddy Biradar, Govindareddy Uday, Y. R. Aruna, H. C. Lohithaswa and A. Mohanrao. Genome and Transcriptome sequence of Finger millet (Eleusine coracana (L.) Gaertn.) provides insights into drought tolerance and nutraceutical properties.
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Biswal D, Konhar R, Debnath M, Parameswaran S, Sundar D, Tandon P. Chloroplast Genome Sequence Annotation of Dendrobium nobile (Asparagales: Orchidaceae), an Endangered Medicinal Orchid from Northeast India.
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M.K. Rasheeda, Vijaya Raghavan Rangamaran, Senthilkumar Srinivasan, Sendhil Kumar Ramaiah, Rajaprabhu Gunasekaran, Santhanakumar Jaypal, Dharani Gopal, Kirubagaran Ramalingam. Comparative profiling of microbial community of three economically important fishes reared in sea cages under tropical offshore environment.
Marine Genomics (2017).
2017
Krzysztof Krawczyk, Barbara Uszczyńska-Ratajczak, Alicja Majewska, Natasza Borodynko-Filas. DNA microarray-based detection and identification of bacterial and viral pathogens of maize.
Journal of Plant Diseases and Protection(2017).
2017
K. Sumathy, Bharathi Kulkarni, Ravi Kumar Gondu, Sampath Kumar Ponnuru, Nagaraju Bonguram, Rakesh Eligeti, Sindhuja Gadiyaram, Usha Praturi, Bhushan Chougule, Latha Karunakaran & Krishna M. Ella. Protective efficacy of Zika Vaccine in AG129 mouse model.
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Sujay Paul, Angel Zhang, Yvette Ludeña, Gretty K. Villena, Fengan Yu, David H. Sherman, Marcel Gutiérrez-Correa. Insights from the genome of a high alkaline cellulase producing Aspergillus fumigatus strain obtained from Peruvian Amazon rainforest.
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Mohd Shariq, Sanjiveeni Dhamgaye, Remya Nair, Neha Goyal, Vaibhav Jain, Arnab Mukhopadhyay, Alok K. Mondal, Gauranga Mukhopadhyay & Rajendra Prasad. The global regulator Ncb2 escapes from the core promoter and impacts transcription in response to drug stress in Candida albicans.
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Chanchal Kumari, Tushar K. Dutta, Sonam Chaudhary, Prakash Banakar, Pradeep K. Papolu, Uma Rao. Molecular characterization of FMRFamide-like peptides in Meloidogyne graminicola and analysis of their knockdown effect on nematode infectivity.
Gene (2017).
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Kavitha Velayudha Vimala Kumar, Nagesh Srikakulam, Priyavathi Padmanabhan and Gopal Pandi. Deciphering microRNAs and Their Associated Hairpin Precursors in a Non‐Model Plant, Abelmoschus esculentus.
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Tarsizio Chikaonda, Nelson Nguluwe, Brian Barnett, Runa H. Gokhale, Robert Krysiak, Isaac Thengolose, Nora E. Rosenberg, Christopher Stanley, James Mpunga, Irving F. Hoffman, Mina Hosseinipour, Lesley Scott, Wendy Stevens. Performance of Xpert® MTB/RIF among tuberculosis outpatients in Lilongwe, Malawi.
African Journal of Laboratory Medicine (2017).
2017
Veena Kochat, Zaffar Equbal, Prakash Baligar, Vikash Kumar, Madhulika Srivastava, Asok Mukhopadhyay. JMJD3 aids in reprogramming of bone marrow progenitor cells to hepatic phenotype through epigenetic activation of hepatic transcription factors.
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Veena Kochat, Zaffar Equbal, Prakash Baligar, Vikash Kumar, Madhulika Srivastava, Asok Mukhopadhyay. JMJD3 aids in reprogramming of bone marrow progenitor cells to hepatic phenotype through epigenetic activation of hepatic transcription factors.
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Ravinder KumarAnil Kumar PinnakaBeena Krishnan.TfoI produced by Tepidimonas fonticaldi PL17, a moderate thermophilic bacterium, is an isoschizomer of MseI.
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Aurelien Ducat, Ludivine Doridot, Rosamaria Calicchio, Celine Méhats, Jean-Luc Vilotte, Johann Castille, Sandrine Barbaux, Betty Couderc, Sébastien Jacques, Franck Letourneur, Christophe Buffat, Fabien Le Grand, Paul Laissue, Francisco Miralles & Daniel Vaiman.Endothelial cell dysfunction and cardiac hypertrophy in the STOX1 model of preeclampsia.
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Alivia Roy, Reetuparna Basak, Umesh Rai. De novo sequencing and comparative analysis of testicular transcriptome from different reproductive phases in freshwater spotted snakehead Channa punctatus.
PLoS ONE (2017).
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Deepika Singh, Debajyoti Kabiraj, Hasnahana Chetia, Pragya Sharma, Kartik Neog, Utpal Bora. Complete mitochondrial genome of golden silk producer Antheraea assamensis and its comparative analysis with other lepidopteran insects.
bioRxiv Preprint (2017).
2017
Atul Kumara, D. Jeya Sundara Sharmila, Sachidanand Singh. SVMRFE based approach for prediction of most discriminatory gene target for type II diabetes.
Genomics Data (2017).
2017
Hasnahana Chetia, Debajyoti Kabiraj, Deepika Singh, Ponnala Vimal Mosahari, Suradip Das, Pragya Sharma, Kartik Neog, Swagata Sharma, P. Jayaprakash, Utpal Bora. De novo transcriptome of the muga silkworm, Antheraea assamensis (Helfer).
Gene Journal (2017).
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Ahlfors, Jan-eric, El-ayoubi, Rouwayda. METHODS FOR REPROGRAMMING CELLS AND USES THEREOF.
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Awanti Sambarey, Abhinandan Devaprasad, Priyanka Baloni, Madhulika Mishra, Abhilash Mohan, Priyanka Tyagi, Amit Singh,JS Akshata, Razia Sultana, Shashidhar Buggi and Nagasuma Chandra. Meta-analysis of host response networks identifies a common core in tuberculosis.
npj Systems Biology and Applications (2017).
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Anirban Kundua, Sujay Paula, Avishek Dey, Amita Pal. High throughput sequencing reveals modulation of microRNAs in Vigna mungo upon Mungbean Yellow Mosaic India Virus inoculation highlighting stress regulation.
Plant Science Journal (2017).
2017
Anirban Roychowdhury, Sudip Samadder, Pijush Das, Sapan Mandloi, Sankar Addya,
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Susanta Roychoudhury, Chinmay Kumar Panda.Integrative genomic and network analysis identified novel genes associated with the development of advanced cervical squamous cell carcinoma.
Biochimica et Biophysica Acta (BBA) – General Subjects (2016).
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R.P. Singh, C.M. Shafeeque, S.K. Sharma, R. Singh, J. Mohan, K.V.H. Sastry, V.K. Saxena, P.A. Azeez. Chicken sperm transcriptome profiling by microarray analysis.
Genome (2016).
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Jyoti Roy, Arijita Sarkar, Sibun Parida, Zhumur Ghosh and Bibekanand Mallick. Small RNA sequencing revealed dysregulated piRNAs in Alzheimer’s disease and their probable role in pathogenesis.
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Pooja Makwana, Appukuttan Nair R. Pradeep, Shambhavi P. Hungund, Kangaram M. Ponnuvel, Kanika Trivedy. The dipteran parasitoid Exorista bombycis induces pro- and anti-oxidative reactions in the silkworm Bombyx mori: Enzymatic and genetic analysis.
Archives of Insect Biochemistry and Physiology (2017).
2017
Mulaka Maruthi, Dipti Singh, Segireddy Rameswara Reddy, Babu S Mastan, Satish Mishra and Kota Arun Kumar. Modulation of host cell SUMOylation facilitates efficient development of Plasmodium berghei and Toxoplasma gondii.
cellular microbiology(2017).
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Faisal Mohammed Abdul Al-Nihmi,Surendra Kumar Kolli, Segireddy Rameswara Reddy, Babu S. Mastan, Jyothi Togiri, Mulaka Maruthi, Roshni Gupta, Puran Singh Sijwali, Satish Mishra & Kota Arun Kumar. A Novel and Conserved Plasmodium Sporozoite Membrane Protein SPELD is Required for Maturation of Exo-erythrocytic Forms.
Scientific Reports (2017).
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Awanti Sambarey, Abhinandan Devaprasad, Abhilash Mohan, Asma Ahmed, Soumya Nayak, Soumya Swaminathan, George D’Souza, Anto Jesuraj, Chirag Dhar, Subash Babu, Annapurna Vykarnam, Nagasuma Chandra.Unbiased Identification of Blood-based Biomarkers for Pulmonary Tuberculosis by Modeling and Mining Molecular Interaction Networks.
EBioMedicine, 2016.
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Manas Ranjan Sahoo, Swati Gaikwad, Deepak Khuperkar, Maitreyi Ashok, Mary Helen, Santosh Kumar Yadav, Aditi Singh, Indrasen Magre, Prachi Deshmukh, Supriya Dhanvijay, Pabitra Kumar Sahoo, Yogendra Ramtirtha, Mallur Srivatsan Madhusudhan, Pananghat Gayathri, Vasudevan Seshadri, Jomon Joseph. Nup358 binds to AGO proteins through its SUMO‐interacting motifs and promotes the association of target mRNA with miRISC.
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Choubey, A. & Rajam, M.V. (2016) Transcriptome response and developmental implications of RNAi-mediated ODC knockdown in tobacco.
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Pandey SS, Patnana PK, Lomada SK, Tomar A, Chatterjee S (2016) Co-regulation of Iron Metabolism and Virulence Associated Functions by Iron and XibR, a Novel Iron Binding Transcription Factor, in the Plant Pathogen Xanthomonas.
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Jees Sebastian, Sharmada Swaminath, Rashmi Ravindran Nair, Kishor Jakkala, Atul Pradhan and Parthasarathi Ajitkumar. (2016) De Novo Emergence of Genetically Resistant Mutants of Mycobacterium tuberculosis from the Persistence Phase Cells formed against Antituberculosis Drugs In Vitro.
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Megha H. Sampangi-Ramaiah, Kundapura V. Ravishankar, Ajitha Rekha, Kodathalu Seetharamaiah Shivashankara, laxman R. Hunashikatti. A Contig-Based Computational Prediction of Conserved miRNAs and Their Probable Role in Regulation of Cuticular Wax Biosynthesis in Banana.
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Deepak Kumar, Saptarshi Hazra, Riddhi Datta & Sharmila Chattopadhyay. Transcriptome analysis of Arabidopsis mutants suggests a crosstalk between ABA, ethylene and GSH against combined cold and osmotic stress.
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Das P, Bansal A, Rao SN, Deodhar K, Mahantshetty U, Shrivastava SK, et al. (2016) Somatic Variations in Cervical Cancers in Indian Patients.
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Muthuswamy M, Uma S, Backiyarani S, Saraswathi MS and Chandrasekar A. Transcriptomic Changes of Drought-Tolerant and Sensitive Banana Cultivars Exposed to Drought Stress.
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Rohini Bhat Valekunja, Vikramshankar Kamakoti, Anitha Peter, Shamprasad Phadnis, Shalini Prasad and Vinay J Nagaraj. The Detection of Papaya Ringspot Virus Coat Protein Using an Electrochemical Immunosensor.
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Jayaraman Suriya,Mootapally Chandra Shekar, Neelam Mustakali Nathani,Thangaiyan Suganya,Subramanian Bharathiraja,Muthukalingan Krishnan. Assessment of bacterial community composition in response to uranium levels in sediment samples of sacred Cauvery River.
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Anirban Kundu, Sujay Paul, Amita Pal and Genotypic Technology. Mungbean Yellow Mosaic India Virus (MYMIV)-infection, Small RNA Library Construction and Deep Sequencing for MicroRNA Identification in Vigna mungo.
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Vandana Sharma, Rajaram Purushotham and Rupinder Kaur. The phosphoinositide 3-kinase regulates retrograde trafficking of the iron permease CgFtr1 and iron homeostasis in Candida glabrata.
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Ruchishree Konhar, Devendra Kumar Biswal, Manish Debnath, Sriram Parameswaran, Durai Sundar, Pramod Tandon. Complete Chloroplast Genome Sequence of Dendrobium nobile from Northeastern India. American Society for Microbiology.
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Akansha Pandey, Vishakha Swarnkar, Tushar Pandey, Piush Srivastava, Sanjeev Kanojiya, Dipak Kumar Mishra & Vineeta Tripathi. Transcriptome and Metabolite analysis reveal candidate genes of the cardiac glycoside biosynthetic pathway from Calotropis procera.
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Pon Arunachalam Boopathi, Amit Kumar Subudhi, Sheetal Middha, Jyoti Acharya, Raja Chinnadurai Mugasimangalam, Sanjay Kumar Kochar, Dhanpat Kumar Kochar, Ashis Das. Design, Construction and Validation of a Plasmodium vivax microarray for the transcriptome profiling of clinical isolates.
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Srilatha Jasty, Subramanian Krishnakumar. Profiling of DNA and histone methylation reveals epigenetic-based regulation of gene expression during retinal differentiation of Stem/progenitor cells isolated from the ciliary pigment epithelium of Human cadaveric eyes.
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Anirban Roychowdhury, Sudip Samadder, Pijush Das, Sapan Mandloi, Sankar Addya, Chandraditya Chakraborty, Partha Sarathi Basu, Ranajit Mondal, Anup Roy, Saikat Chakrabarti, Susanta Roychoudhury, Chinmay Kumar Panda. Integrative genomic and network analysis identified novel genes associated with the development of advanced cervical squamous cell carcinoma.
Biochimica et Biophysica Acta (BBA) – General Subjects (2016).
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Devika Ranade, Shivsmriti Koul, Joyce Thompson, Kumar Brajesh Prasad, Kundan Sengupta. Chromosomal aneuploidies induced upon Lamin B2 depletion are mislocalized in the interphase nucleus.
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Kaliyappan R, Viswanathan S, Suthanthiram B, Subbaraya U, Marimuthu Somasundram S, et al. (2016) Evolutionary Expansion of WRKY Gene Family in Banana and Its Expression Profile during the Infection of Root Lesion Nematode, Pratylenchus coffeae.
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Atish Ray, Asani Bhaduri, Nidhi Srivastava, Shibnath Mazumder. Identification of novel signature genes attesting arsenic-induced immune alterations in adult zebrafish (Danio rerio).
Journal of Hazardous Materials(2017);Volume 321, Pages 121–131
2016
Ganesan S, Alex AA, Chendamarai E, Balasundaram N, Palani HK, David S, Kulkarni U, Aiyaz M, Mugasimangalam R, Korula A, Abraham A, Srivastava A, Padua RA, Chomienne C, George B, Balasubramanian P, Mathews V. Rationale and efficacy of proteasome inhibitor combined with arsenic trioxide in the treatment of acute promyelocytic
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Snehal D. Karpe, Rikesh Jain, Axel Brockmann and R. Sowdhamini.Identification of complete repertoire of Apis florea odorant receptors reveals complex orthologous relationships with Apis mellifera.
Genome Biology and Evolution,2016;doi:10.1093/gbe/evw202
2016
Haoxin Li, Andrew Cowie, John A. Johnson, Duncan Webster, Christopher J. Martyniuk and Christopher A. Gray. Determining the mode of action of anti-mycobacterial C17 diyne natural products using expression profiling: evidence for fatty acid biosynthesis inhibition.
BMC Genomics (2016) 17:621. DOI 10.1186/s12864-016-2949-y
2016
Sujay Paul, Yolanda Cortez,Nadia Vera,Gretty K. Villena and Marcel Gutiérrez-Correa.
BBJ, 15(1): 1-11, 2016; Article no.BBJ.27519
2016
Pallavi Kakade, Parag Sadhale, Kaustuv Sanyal & Valakunja Nagaraja. ZCF32, a fungus specific Zn(II)2 Cys6 transcription factor, is a repressor of the biofilm development in the human pathogen Candida albicans.
Scientific Reports 6, Article number: 31124 (2016) doi:10.1038/srep31124.
2016
Cornelia Braicu, Sonia Selicean, Roxana Cojocneanu-Petric, Raduly Lajos, Ovidiu Balacescu, Ionelia Taranu, Daniela Eliza Marin, Monica Motiu, Ancuta Jurj, Patriciu Achimas-Cadariu and Ioana Berindan-Neagoe.Evaluation of cellular and molecular impact of zearalenone and Escherichia coli co-exposure on IPEC-1 cells using microarray technology.
BMC Genomics (2016);17:576. DOI: 10.1186/s12864-016-2830-z
2016
Josephy D. DiBattista, Xin Wang, Pablo Saenz-Agudelo, Marek J. Piatek, Manuel Aranda, Michael L Berumen.Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): current status and its characteristics.
Molecular Ecology Resources (2016); DOI: 10.1111/1755-0998.12588
2016
Ashok Ganapathy, Sridhar Jayavel and Sivakumar Natesan. Draft Genome Sequence of Carotenoid Producing Yellow Pigmented Planococcus maritimus MKU009.
Journal of Genomics 2016, Vol. 4: 23-25. doi: 10.7150/jgen.15533
2016
Vairavan Lakshmanan, Dhiru Bansal, Jahnavi Kulkarni, Deepak Poduval, Srikar Krishna, Vidyanand Sasidharan, Praveen Anand, Aswin Seshasayee and Dasaradhi Palakodeti. Genome-wide analysis of polyadenylation events in Schmidtea mediterranea.
G3: Genes|Genomes|Genetics (2016)doi:10.1534/g3.116.031120
2016
Alok Kumar Singh, Rajeev Kumar Pandey, Chandrima Shaha & Rentala Madhubala. MicroRNA expression profiling of Leishmania donovani-infected host cells uncovers the regulatory role of MIR30A-3p in host autophagy.
Autophagy (2016)
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Amit Kumar Subudhi, P.A. Boopathi, Sheetal Middha, Jyoti Acharya, Sudha Narayana Rao, Raja C. Mugasimangalam, Paramendra Sirohi, Sanjay K. Kochar, Dhanpat K. Kochar, Ashis Das. A cross strain Plasmodium falciparum microarray optimized for the transcriptome analysis of Plasmodium falciparum patient derived isolates.
Genomics Data (2016); Vol 9, Pg 118–125
2016
Chakrapani, V., Patra, S.K., Mohapatra, S.D. et al. Comparative transcriptomic profiling of larvae and post-larvae of Macrobrachium rosenbergii in response to metamorphosis and salinity exposure.
Genes Genom (2016). doi:10.1007/s13258-016-0452-0
2016
Moiz A. Ansari1, Zeeshan Fatima1, Saif Hameed. Mechanistic insights into the mode of action of anticandidal sesamol.
Microbial Pathogenesis (2016); vol 98, Pg 140-148
2016
Sujay Paul, Yolanda Cortez, Nadia Vera, Gretty K. Villena, Marcel Gutiérrez-Correa. Metagenomic analysis of microbial community of an Amazonian geothermal spring in Peru.
Genomics Data (2016); Vol 9, pg 63-66
2016
Jatoth Balsingh, Surabhi Radhakrishna, Kandasamy Ulaganathan.Draft Genome Sequence of Bacillus pumilus ku-bf1 Isolated from the Gut Contents of Wood Boring Mesomorphus sp.
Front. Microbiol,2016 June, doi:10.3389/fmicb.2016.01037
2016
Shilpa Sharma, Gurudutta Gangenahalli. Gene Expression Profiling of Human c-Kit Mutant D816V.
Journal of Cancer Therapy, 2016 June,Vol 7,Pg 439-454
2016
Mahendra Gaur, Aradhana Das, Rajesh Kumar Sahoo, Sujata Mohanty, Raj Kumar Joshi, Enketeswara Subudhi. Comparative transcriptome analysis of ginger variety Suprabha from two different agro-climatic zones of Odisha.
Genomics Data, 2016 September, Vol 9, Pages 42–43
2016
Mahendra Gaur,Aradhana Das,Rajesh Kumar Sahoo,Basudeba Kar,Sanghamitra Nayak,Enketeswara Subudhi.De Novo transcriptome assembly of Zingiber officinale cv. Suruchi of Odisha.
Genomics Data, 2016 September,Vol 9,Pages 87–88
2016
Naveen Prasad, Shreeharsha Tarikere, Dhanashree Khanale, Farhat Habib, LS Shashidhara.A comparative genomic analysis of targets of Hox protein Ultrabithorax amongst
distant insect species.
distant insect species.
Scientific Reports, 2016, vol 6, Article number: 27885.doi:10.1038/srep27885
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Nilakshi Samaranayake, Sumadhya D. FernandoEmail author, Nilaksha F. Neththikumara, Chaturaka Rodrigo, Nadira D. Karunaweera and Vajira H. W. Dissanayake.Association of HLA class I and II genes with cutaneous leishmaniasis: a case control study from Sri Lanka and a systematic review.
BMC Infectious Diseases, (2016) 16:292.DOI 10.1186/s12879-016-
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Aarti Yadav, Udita Chandra & Swati Saha. Histone acetyltransferase HAT4 modulates navigation across G2/M and re-entry into G1 in Leishmania donovani.
Nature Publishing Group. Scientific Reports, 2016 June, Vol 6
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S. Dharshinia, M. Chakravarthia, J.Ashwin Narayana, V.M. Manoj, M. Naveenarani, Ravinder Kumar, Minturam Meena, Bakshi Ram, C. Appunu. De novo sequencing and transcriptome analysis of a low temperature tolerant Saccharum spontaneum clone IND 00-1037.
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2016
Anirvan Chatterjee, Farhan Ali, Disha Bange, Kiran Kondabagil. solation and complete genome sequencing of Mimivirus bombay, a Giant Virus in sewage of Mumbai, India.
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Aleksei Krasnov, Hooman Moghadam, Thomas Larsson, Sergey Afanasyev, Turid Mørkøre. Gene expression profiling in melanised sites of Atlantic salmon fillets.
Fish & Shellfish Immunology, 2016 August, Vol 55, Pg 56-63
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Satendra Kumar Mangrauthia, Surekha Agarwal, B. Sailaja, N. Sarla, S. R. Voleti. Transcriptome Analysis of Oryza sativa (Rice) Seed Germination at High Temperature Shows Dynamics of Genome Expression Associated with Hormones Signalling and Abiotic Stress Pathways.
Tropical Plant Biol. (2016). doi:10.1007/s12042-016-9170-7
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Kushal N. Gohil, Priya S. Neurgaonkar , Aditi Paranjpe , Syed G. Dastager, Mahesh S. Dharne. Peeping into genomic architecture by re-sequencing of Ochrobactrum intermedium M86 strain during laboratory adapted conditions.
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Kamaldeen Nasrin Nisha, Jayavel Sridhar, Perumal Varalakshmi and Balasubramaniem Ashokkumar Draft Genome Sequence of Paracoccus sp. MKU1, a New Bacterial Strain Isolated from an Industrial Effluent with Potential for Bioremediation.
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Rathan S. Jadav, Dharmika Kumara, Natasha Buwa, Shubhra Gangulia, Sitalakshmi R. Thampattya, Nagaraj Balasubramanian, Rashna Bhandaria. Deletion of inositol hexakisphosphate kinase 1 (IP6K1) reduces cell migration and invasion, conferring protection from aerodigestive tract
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Garima Sharma, Divya Tej Sowpati, Prakruti Singh, Mehak Zahoor Khan, Rakesh Ganji, Sandeep Upadhyay, Sharmistha Banerjee, Vinay Kumar Nandicoori & Sanjeev Khosla. Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection.
Scientific Reports 6, Article number: 25006 (2016) doi:10.1038/srep25006
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Oliver J Hickman, Richard A Smith, Prokar Dasgupta, Sudha Narayana Rao, Soumya Nayak, Shubha Sreenivasan, Annapurna Vyakarnam and Christine Galustian. Expression of two WFDC1/ps20 isoforms in prostate stromal cells induces paracrine apoptosis through regulation of
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Mohan A, Singh RS, Kumari M, Garg D, Upadhyay A, Ecelbarger CM, et al. (2016) Urinary Exosomal microRNA-451-5p Is a Potential Early Biomarker of Diabetic Nephropathy in Rats.
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Manjima chatterjee, Upasana Mukherjee, Narmada Ashok, Raja Das, Suvrajit Das and Radha Saraswathy. MCP polymorphism, environmental risk factors and asthma – a hospital based study in vellore.
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Hittalmani S, Mahesh HB, Mahadevaiah C, Prasannakumar MK. De novo genome assembly and annotation of rice sheath rot fungus Sarocladium oryzae reveals genes involved in Helvolic acid and Cerulenin biosynthesis pathways.
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Haddad NJ, Batainh A, Saini D, et al. Evaluation of Apis mellifera syriaca Levant region honeybee conservation using comparative genome hybridization.
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Nair RG, Kaur G, Khatri I, Singh NK, Maurya SK, et al. (2016) Genome Mining and Comparative Genomic Analysis of Five Coagulase-Negative Staphylococci (CNS) Isolated from Human Colon and Gall Bladder.
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Saxena S, Saxena VK, Tomar S, Sapcota D, Gonmei G. Characterization of caecum and crop microbiota of Indian indigenous chicken targeting multiple hypervariable regions within 16s rRNA gene.
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Balachander GM, Balaji SA, Rangarajan A, Chatterjee K. Enhanced Metastatic Potential in a 3D Tissue Scaffold toward a Comprehensive in Vitro Model for Breast Cancer Metastasis.
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Kushwaha P, Khedgikar V, Sharma D, et al. MicroRNA 874-3p Exerts Skeletal Anabolic Effects Epigenetically during Weaning by Suppressing Hdac1 Expression.
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Manisha P, Mamta T, Umesh R, Soma M G. Tracing the evolutionary lineage of pattern recognition receptor homologues in vertebrates: An insight into reptilian immunity via de novo sequencing of the wall lizard splenic transcriptome.
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Gupta KR, Baloni P, Indi SS, Chatterji D. Regulation of growth, cell shape, cell division and gene expression by second messengers (p)ppGpp and c-di-GMP in Mycobacterium smegmatis.
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Sayak Ganguli, Avishek Dey, Rahul Banik, Anirban Kundu, Amita Pal, Analyses of MYMIV-induced transcriptome in Vigna mungo as revealed by next generation sequencing, Genomics Data (2016)
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Blessia TF, Singh S, Vennila JJ. Unwinding the Novel Genes Involved in the Differentiation of Embryonic Stem Cells into Insulin-Producing Cells: A Network-Based Approach.
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Govindaraj L, Gupta T, Esvaran VG, Awasthi AK, Ponnuvel KM. Genome-wide identification, characterization of sugar transporter genes in the silkworm Bombyx mori and role in Bombyx mori nucleopolyhedrovirus (BmNPV) infection.
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Archana Singh, Enketeswara Subudhi, Rajesh Kumar Sahoo, Mahendra Gaur, Investigation of the microbial community in the Odisha hot spring cluster based on the cultivation independent approach.
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